Merge remote-tracking branch 'origin/develop' into

[jalview.git] / test / jalview / io / JSONFileTest.java

diff --git a/test/jalview/io/JSONFileTest.java b/test/jalview/io/JSONFileTest.java
index acde68d..3b418ec 100644 (file)
--- a/test/jalview/io/JSONFileTest.java
+++ b/test/jalview/io/JSONFileTest.java
@@ -27,7 +27,7 @@ import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceGroup;
@@ -79,7 +79,7 @@ public class JSONFileTest
 
   private HashMap<String, SequenceGroup> expectedGrps = new HashMap<String, SequenceGroup>();
 
-  private ColumnSelection expectedColSel = new ColumnSelection();
+  private HiddenColumns expectedColSel = new HiddenColumns();
 
   private SequenceI[] expectedHiddenSeqs = new SequenceI[1];
 
@@ -195,7 +195,7 @@ public class JSONFileTest
     TEST_SEQ_HEIGHT = expectedSeqs.size();
     TEST_GRP_HEIGHT = expectedGrps.size();
     TEST_ANOT_HEIGHT = expectedAnnots.size();
-    TEST_CS_HEIGHT = expectedColSel.getHiddenColumns().size();
+    TEST_CS_HEIGHT = expectedColSel.getListOfCols().size();
 
     exportSettings = new AlignExportSettingI()
     {
@@ -244,7 +244,7 @@ public class JSONFileTest
       jf = (JSONFile) formatAdapter.getAlignFile();
 
       AlignFrame af = new AlignFrame(alignment, jf.getHiddenSequences(),
-              jf.getColumnSelection(), AlignFrame.DEFAULT_WIDTH,
+              jf.getHiddenColumns(), AlignFrame.DEFAULT_WIDTH,
               AlignFrame.DEFAULT_HEIGHT);
       af.getViewport().setShowSequenceFeatures(jf.isShowSeqFeatures());
       String colourSchemeName = jf.getGlobalColourScheme();
@@ -313,13 +313,13 @@ public class JSONFileTest
   @Test(groups = { "Functional" })
   public void hiddenColsTest()
   {
-    ColumnSelection cs = testJsonFile.getColumnSelection();
+    HiddenColumns cs = testJsonFile.getHiddenColumns();
     Assert.assertNotNull(cs);
-    Assert.assertNotNull(cs.getHiddenColumns());
-    List<int[]> hiddenCols = cs.getHiddenColumns();
+    Assert.assertNotNull(cs.getListOfCols());
+    List<int[]> hiddenCols = cs.getListOfCols();
     Assert.assertEquals(hiddenCols.size(), TEST_CS_HEIGHT);
     Assert.assertEquals(hiddenCols.get(0), expectedColSel
-            .getHiddenColumns().get(0),
+            .getListOfCols().get(0),
             "Mismatched hidden columns!");
   }
 
@@ -359,7 +359,7 @@ public class JSONFileTest
       JSONFile bioJsonFile = (JSONFile) formatAdapter.getAlignFile();
       AlignFrame alignFrame = new AlignFrame(_alignment,
               bioJsonFile.getHiddenSequences(),
-              bioJsonFile.getColumnSelection(), AlignFrame.DEFAULT_WIDTH,
+              bioJsonFile.getHiddenColumns(), AlignFrame.DEFAULT_WIDTH,
               AlignFrame.DEFAULT_HEIGHT);
 
       /*