JAL-3706 handle virtual feature extending to unmapped stop codon

[jalview.git] / test / jalview / io / SequenceAnnotationReportTest.java

diff --git a/test/jalview/io/SequenceAnnotationReportTest.java b/test/jalview/io/SequenceAnnotationReportTest.java
index 772ed2b..57821c9 100644 (file)
--- a/test/jalview/io/SequenceAnnotationReportTest.java
+++ b/test/jalview/io/SequenceAnnotationReportTest.java
@@ -61,23 +61,20 @@ public class SequenceAnnotationReportTest
   {
     SequenceAnnotationReport sar = new SequenceAnnotationReport(false);
     StringBuilder sb = new StringBuilder();
-    sb.append("123456");
+    sb.append("foo ");
     SequenceFeature sf = new SequenceFeature("disulfide bond", "desc", 1,
             3, 1.2f, "group");
 
-    // residuePos == 2 does not match start or end of feature, nothing done:
-    sar.appendFeature(sb, 2, null, sf, null, 0);
-    assertEquals("123456", sb.toString());
-
     // residuePos == 1 matches start of feature, text appended (but no <br/>)
     // feature score is not included
     sar.appendFeature(sb, 1, null, sf, null, 0);
-    assertEquals("123456disulfide bond 1:3", sb.toString());
+    assertEquals("foo disulfide bond 1:3", sb.toString());
 
-    // residuePos == 3 matches end of feature, text appended
+    // residuePos == 2 doesnt' match end of feature, text appended anyway
+    // (the test for this is handled by FeatureStore.findContactFeatures())
     // <br/> is prefixed once sb.length() > 6
-    sar.appendFeature(sb, 3, null, sf, null, 0);
-    assertEquals("123456disulfide bond 1:3<br/>disulfide bond 1:3",
+    sar.appendFeature(sb, 2, null, sf, null, 0);
+    assertEquals("foo disulfide bond 1:3<br/>disulfide bond 1:3",
             sb.toString());
   }