JAL-2446 merged to spike branch

[jalview.git] / test / jalview / schemes / FeatureColourTest.java

diff --git a/test/jalview/schemes/FeatureColourTest.java b/test/jalview/schemes/FeatureColourTest.java
index 9d9d996..1beca80 100644 (file)
--- a/test/jalview/schemes/FeatureColourTest.java
+++ b/test/jalview/schemes/FeatureColourTest.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.schemes;
 
 import static org.testng.AssertJUnit.assertEquals;
@@ -6,14 +26,25 @@ import static org.testng.AssertJUnit.assertTrue;
 import static org.testng.AssertJUnit.fail;
 
 import jalview.datamodel.SequenceFeature;
+import jalview.gui.JvOptionPane;
+import jalview.util.ColorUtils;
 import jalview.util.Format;
 
 import java.awt.Color;
 
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 public class FeatureColourTest
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   @Test(groups = { "Functional" })
   public void testCopyConstructor()
   {
@@ -56,7 +87,8 @@ public class FeatureColourTest
   public void testIsColored_simpleColour()
   {
     FeatureColour fc = new FeatureColour(Color.RED);
-    assertTrue(fc.isColored(new SequenceFeature()));
+    assertTrue(fc
+            .isColored(new SequenceFeature("Cath", "", 1, 2, 0f, null)));
   }
 
   @Test(groups = { "Functional" })
@@ -64,7 +96,8 @@ public class FeatureColourTest
   {
     FeatureColour fc = new FeatureColour();
     fc.setColourByLabel(true);
-    assertTrue(fc.isColored(new SequenceFeature()));
+    assertTrue(fc
+            .isColored(new SequenceFeature("Cath", "", 1, 2, 0f, null)));
   }
 
   @Test(groups = { "Functional" })
@@ -81,13 +114,15 @@ public class FeatureColourTest
     assertEquals(Color.WHITE, fc.getColor(sf));
 
     // score 120 is adjusted to top of range
-    sf.setScore(120f);
+    sf = new SequenceFeature(sf, sf.getBegin(), sf.getEnd(),
+            sf.getFeatureGroup(), 120f);
     assertEquals(Color.BLACK, fc.getColor(sf));
 
     // value below threshold is still rendered
     // setting threshold has no effect yet...
     fc.setThreshold(60f);
-    sf.setScore(36f);
+    sf = new SequenceFeature(sf, sf.getBegin(), sf.getEnd(),
+            sf.getFeatureGroup(), 36f);
     assertTrue(fc.isColored(sf));
     assertEquals(new Color(204, 204, 204), fc.getColor(sf));
 
@@ -97,7 +132,9 @@ public class FeatureColourTest
     // colour is still returned though ?!?
     assertEquals(new Color(204, 204, 204), fc.getColor(sf));
 
-    sf.setScore(84); // above threshold now
+    sf = new SequenceFeature(sf, sf.getBegin(), sf.getEnd(),
+            sf.getFeatureGroup(), 84f);
+    // above threshold now
     assertTrue(fc.isColored(sf));
     assertEquals(new Color(51, 51, 51), fc.getColor(sf));
   }
@@ -106,7 +143,8 @@ public class FeatureColourTest
   public void testGetColor_simpleColour()
   {
     FeatureColour fc = new FeatureColour(Color.RED);
-    assertEquals(Color.RED, fc.getColor(new SequenceFeature()));
+    assertEquals(Color.RED,
+            fc.getColor(new SequenceFeature("Cath", "", 1, 2, 0f, null)));
   }
 
   @Test(groups = { "Functional" })
@@ -116,7 +154,7 @@ public class FeatureColourTest
     fc.setColourByLabel(true);
     SequenceFeature sf = new SequenceFeature("type", "desc", 0, 20, 1f,
             null);
-    Color expected = UserColourScheme.createColourFromName("desc");
+    Color expected = ColorUtils.createColourFromName("desc");
     assertEquals(expected, fc.getColor(sf));
   }