public void testIsColored_simpleColour()
{
FeatureColour fc = new FeatureColour(Color.RED);
- assertTrue(fc.isColored(new SequenceFeature()));
+ assertTrue(fc
+ .isColored(new SequenceFeature("Cath", "", 1, 2, 0f, null)));
}
@Test(groups = { "Functional" })
{
FeatureColour fc = new FeatureColour();
fc.setColourByLabel(true);
- assertTrue(fc.isColored(new SequenceFeature()));
+ assertTrue(fc
+ .isColored(new SequenceFeature("Cath", "", 1, 2, 0f, null)));
}
@Test(groups = { "Functional" })
assertEquals(Color.WHITE, fc.getColor(sf));
// score 120 is adjusted to top of range
- sf.setScore(120f);
+ sf = new SequenceFeature(sf, sf.getBegin(), sf.getEnd(),
+ sf.getFeatureGroup(), 120f);
assertEquals(Color.BLACK, fc.getColor(sf));
// value below threshold is still rendered
// setting threshold has no effect yet...
fc.setThreshold(60f);
- sf.setScore(36f);
+ sf = new SequenceFeature(sf, sf.getBegin(), sf.getEnd(),
+ sf.getFeatureGroup(), 36f);
assertTrue(fc.isColored(sf));
assertEquals(new Color(204, 204, 204), fc.getColor(sf));
// colour is still returned though ?!?
assertEquals(new Color(204, 204, 204), fc.getColor(sf));
- sf.setScore(84); // above threshold now
+ sf = new SequenceFeature(sf, sf.getBegin(), sf.getEnd(),
+ sf.getFeatureGroup(), 84f);
+ // above threshold now
assertTrue(fc.isColored(sf));
assertEquals(new Color(51, 51, 51), fc.getColor(sf));
}
public void testGetColor_simpleColour()
{
FeatureColour fc = new FeatureColour(Color.RED);
- assertEquals(Color.RED, fc.getColor(new SequenceFeature()));
+ assertEquals(Color.RED,
+ fc.getColor(new SequenceFeature("Cath", "", 1, 2, 0f, null)));
}
@Test(groups = { "Functional" })