}
/**
- * Test mapping a column selection including hidden columns
- *
- * @throws IOException
- */
- @Test
- public void testMapColumnSelection_hiddenColumns() throws IOException
- {
- setupMappedAlignments();
-
- ColumnSelection colsel = new ColumnSelection();
-
- /*
- * Column 0 in protein picks up Seq2/L, Seq3/G which map to cols 0-4 and 0-3
- * in dna respectively, overall 0-4
- */
- colsel.addElement(0);
- ColumnSelection cs = MappingUtils.mapColumnSelection(colsel,
- proteinView, dnaView);
- assertEquals("[0, 1, 2, 3, 4]", cs.getSelected().toString());
-
- fail("write me");
- }
-
- /**
* Test mapping a column selection in dna to its protein equivalent
*
* @throws IOException