JAL-1270 set Cache properties in setUp to ensure test success

[jalview.git] / test / jalview / ws / PDBSequenceFetcherTest.java

diff --git a/test/jalview/ws/PDBSequenceFetcherTest.java b/test/jalview/ws/PDBSequenceFetcherTest.java
index 0868ded..778fc18 100644 (file)
--- a/test/jalview/ws/PDBSequenceFetcherTest.java
+++ b/test/jalview/ws/PDBSequenceFetcherTest.java
@@ -20,16 +20,18 @@
  */
 package jalview.ws;
 
-import static org.junit.Assert.*;
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.SequenceI;
-import jalview.ws.seqfetcher.DbSourceProxy;
+import static org.junit.Assert.assertTrue;
 
 import java.util.List;
 
 import org.junit.Before;
 import org.junit.Test;
 
+import jalview.bin.Cache;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
+import jalview.ws.seqfetcher.DbSourceProxy;
+
 public class PDBSequenceFetcherTest
 {
 
@@ -38,6 +40,12 @@ public class PDBSequenceFetcherTest
   @Before
   public void setUp() throws Exception
   {
+    // ensure 'add annotation from structure' is selected
+    Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
+            Boolean.TRUE.toString());
+    Cache.applicationProperties.setProperty("ADD_SS_ANN",
+            Boolean.TRUE.toString());
+
     sf = new SequenceFetcher(false);
   }