JAL-3626 from JAL-3253-applet Cache applicationProperties made private

[jalview.git] / test / jalview / ws / dbsources / RemoteFormatTest.java

diff --git a/test/jalview/ws/dbsources/RemoteFormatTest.java b/test/jalview/ws/dbsources/RemoteFormatTest.java
index 90d4472..9d40624 100644 (file)
--- a/test/jalview/ws/dbsources/RemoteFormatTest.java
+++ b/test/jalview/ws/dbsources/RemoteFormatTest.java
@@ -46,12 +46,12 @@ public class RemoteFormatTest
   {
     Cache.loadProperties("test/jalview/io/testProps.jvprops");
     // ensure 'add annotation from structure' is selected
-    Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
+    Cache.setPropertyNoSave("STRUCT_FROM_PDB",
             Boolean.TRUE.toString());
-    Cache.applicationProperties.setProperty("ADD_SS_ANN",
+    Cache.setPropertyNoSave("ADD_SS_ANN",
             Boolean.TRUE.toString());
 
-    sf = new SequenceFetcher(false);
+    sf = new SequenceFetcher();
   }
 
   @DataProvider(name = "AccessionData")
@@ -80,7 +80,7 @@ public class RemoteFormatTest
     SequenceI sq = al.getSequenceAt(0);
     // suppress this check as only Uniprot and PDB acquire PDB refs
     // assertTrue(sq.getAllPDBEntries().size() > 0, "No PDBEntry on sequence.");
-    assertTrue(sq.getDBRefs().length > 0, "No DBRef on sequence.");
+    assertTrue(sq.getDBRefs().size() > 0, "No DBRef on sequence.");
     // suppress this test as only certain databases provide 'primary' dbrefs
     // assertFalse(sq.getPrimaryDBRefs().isEmpty());
     int length = AlignSeq.extractGaps("-. ", sq.getSequenceAsString())
@@ -92,7 +92,7 @@ public class RemoteFormatTest
   @Test(groups = { "Network" })
   public void testUniprotFreeTextSearch() throws Exception
   {
-    List<FTSDataColumnI> wantedFields = new ArrayList<FTSDataColumnI>();
+    List<FTSDataColumnI> wantedFields = new ArrayList<>();
     FTSRestClientI client = UniProtFTSRestClient.getInstance();
     wantedFields.add(client.getDataColumnByNameOrCode("id"));
     wantedFields.add(client.getDataColumnByNameOrCode("entry name"));