Merge branch 'develop' (JAL-4102 2.11.2.6 patch release) into features/r2_11_2_alphaf...

[jalview.git] / test / jalview / ws / dbsources / UniprotTest.java

diff --git a/test/jalview/ws/dbsources/UniprotTest.java b/test/jalview/ws/dbsources/UniprotTest.java
index a7eedf1..7eb3b75 100644 (file)
--- a/test/jalview/ws/dbsources/UniprotTest.java
+++ b/test/jalview/ws/dbsources/UniprotTest.java
@@ -232,6 +232,17 @@ public class UniprotTest
      */
     assertTrue(res.get(0).isCanonical());
     assertFalse(res.get(1).isCanonical());
+
+    // check version is preserved for EMBLCDS
+    res = DBRefUtils.searchRefs(seq.getDBRefs(), "AAK85932");
+    assertEquals(1, res.size());
+    // Ideally we would expect AAK85932.1 -> AAK85932
+    // assertTrue("1".equals(res.get(0).getVersion()));
+    // but it also passes through DBrefUtils.ensurePrimaries which adds
+    // (promoted) to the version string
+    // FIXME: Jim needs to specify what (promoted) means !! - or perhaps we just
+    // ignore it !
+    assertEquals("1 (promoted)", (res.get(0).getVersion()));
   }
 
   /**