JAL-1705 derive transcript sequences from gene sequence/GFF; handle CDS
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 26 Jan 2016 16:36:03 +0000 (16:36 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 26 Jan 2016 16:36:03 +0000 (16:36 +0000)
commit0b8abe58b934e03c34575b06d532a99f0ba70196
tree6df99a84833a21df998774758e66b825a9d35e29
parentf9b80711054b61e8c2257488a1637e15616cb9c9
JAL-1705 derive transcript sequences from gene sequence/GFF; handle CDS
phase != 0
src/jalview/datamodel/SequenceFeature.java
src/jalview/ext/ensembl/EnsemblCdna.java
src/jalview/ext/ensembl/EnsemblCds.java
src/jalview/ext/ensembl/EnsemblGene.java
src/jalview/ext/ensembl/EnsemblGenome.java
src/jalview/ext/ensembl/EnsemblProtein.java
src/jalview/ext/ensembl/EnsemblSeqProxy.java
src/jalview/io/FeaturesFile.java
src/jalview/io/gff/Gff3Helper.java
src/jalview/io/gff/GffHelperBase.java