JAL-3417 access to consensus,conservation,cdsprofile and rnastrucconsensus calculatio...
authorJim Procter <jprocter@issues.jalview.org>
Fri, 23 Aug 2019 15:15:23 +0000 (16:15 +0100)
committerJim Procter <jprocter@issues.jalview.org>
Fri, 23 Aug 2019 15:15:23 +0000 (16:15 +0100)
commit17120879bd8e01ef654f70ae16ff607472442497
treea543d28fb717735c745234d8aa690e55eeb2dc83
parent7714ab633054bde0c558541262244fac56a96673
JAL-3417 access to consensus,conservation,cdsprofile and rnastrucconsensus calculation objects moved from AlignViewportI to AnnotatedCollectionI. AlignViewport methods left, but profiles etc are now stored on Alignment. SequenceGroups can now have their own RNA structure consensus, etc, too.
src/jalview/datamodel/Alignment.java
src/jalview/datamodel/AlignmentI.java
src/jalview/datamodel/SequenceCollectionI.java
src/jalview/datamodel/SequenceGroup.java
src/jalview/viewmodel/AlignmentViewport.java