JAL-1705 JAL-1191 SequenceOntologyLite added as hard-coded alternative
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Mon, 1 Feb 2016 10:17:49 +0000 (10:17 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Mon, 1 Feb 2016 10:17:49 +0000 (10:17 +0000)
commit3cccac4697c371b1964236e17b532fd3d180e1c4
tree39a1c1212769cea66704695fba73841dab8c7619
parent949fed115506ff00c221669e096546f9c39a6ace
JAL-1705 JAL-1191 SequenceOntologyLite added as hard-coded alternative
15 files changed:
src/jalview/analysis/AlignmentUtils.java
src/jalview/ext/ensembl/EnsemblCdna.java
src/jalview/ext/ensembl/EnsemblCds.java
src/jalview/ext/ensembl/EnsemblGene.java
src/jalview/ext/ensembl/EnsemblOverlap.java
src/jalview/ext/ensembl/EnsemblRestClient.java
src/jalview/ext/ensembl/EnsemblSeqProxy.java
src/jalview/io/gff/Gff3Helper.java
src/jalview/io/gff/InterProScanHelper.java
src/jalview/io/gff/SequenceOntology.java
src/jalview/io/gff/SequenceOntologyFactory.java [new file with mode: 0644]
src/jalview/io/gff/SequenceOntologyI.java [new file with mode: 0644]
src/jalview/io/gff/SequenceOntologyLite.java [new file with mode: 0644]
test/jalview/ext/ensembl/EnsemblSeqProxyTest.java
test/jalview/io/gff/SequenceOntologyTest.java