source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	Jim Procter <jprocter@issues.jalview.org>
	Wed, 5 Oct 2016 16:32:54 +0000 (17:32 +0100)
committer	Jim Procter <jprocter@issues.jalview.org>
	Wed, 5 Oct 2016 16:32:54 +0000 (17:32 +0100)
commit	604cbee405a837565ba1a74aa9bddd62aed685ab
tree	9ce44cfb1916fc2a8f3f201311636a17d984b175	tree \| snapshot
parent	dde303bc73617ab4eb3e681e67cf899e6a971318	commit \| diff

JAL-2189 apply license

95 files changed:

examples/testdata/test.html		diff \| blob \| history
src/jalview/api/DBRefEntryI.java		diff \| blob \| history
src/jalview/api/FeatureColourI.java		diff \| blob \| history
src/jalview/api/FeaturesSourceI.java		diff \| blob \| history
src/jalview/bin/ArgsParser.java		diff \| blob \| history
src/jalview/datamodel/MappingType.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblCdna.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblCds.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblFeatures.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblGene.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblGenome.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblGenomes.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblInfo.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblLookup.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblProtein.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblRestClient.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblSeqProxy.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblSequenceFetcher.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblSymbol.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblXref.java		diff \| blob \| history
src/jalview/ext/ensembl/Species.java		diff \| blob \| history
src/jalview/ext/htsjdk/HtsContigDb.java		diff \| blob \| history
src/jalview/ext/so/SequenceOntology.java		diff \| blob \| history
src/jalview/fts/core/DecimalFormatTableCellRenderer.java		diff \| blob \| history
src/jalview/fts/core/FTSRestClient.java		diff \| blob \| history
src/jalview/io/PDBFeatureSettings.java		diff \| blob \| history
src/jalview/io/StructureFile.java		diff \| blob \| history
src/jalview/io/gff/ExonerateHelper.java		diff \| blob \| history
src/jalview/io/gff/Gff2Helper.java		diff \| blob \| history
src/jalview/io/gff/Gff3Helper.java		diff \| blob \| history
src/jalview/io/gff/GffConstants.java		diff \| blob \| history
src/jalview/io/gff/GffHelperBase.java		diff \| blob \| history
src/jalview/io/gff/GffHelperFactory.java		diff \| blob \| history
src/jalview/io/gff/GffHelperI.java		diff \| blob \| history
src/jalview/io/gff/InterProScanHelper.java		diff \| blob \| history
src/jalview/io/gff/SequenceOntologyFactory.java		diff \| blob \| history
src/jalview/io/gff/SequenceOntologyI.java		diff \| blob \| history
src/jalview/io/gff/SequenceOntologyLite.java		diff \| blob \| history
src/jalview/schemes/FeatureColour.java		diff \| blob \| history
src/jalview/schemes/FeatureSettingsAdapter.java		diff \| blob \| history
src/jalview/structure/StructureImportSettings.java		diff \| blob \| history
src/jalview/util/ArrayUtils.java		diff \| blob \| history
src/jalview/util/CaseInsensitiveString.java		diff \| blob \| history
src/jalview/util/DnaUtils.java		diff \| blob \| history
src/jalview/util/HttpUtils.java		diff \| blob \| history
src/jalview/workers/AlignmentAnnotationFactory.java		diff \| blob \| history
src/jalview/workers/AnnotationProviderI.java		diff \| blob \| history
src/jalview/workers/FeatureCounterI.java		diff \| blob \| history
src/jalview/ws/SequenceFetcherFactory.java		diff \| blob \| history
src/jalview/ws/sifts/MappingOutputPojo.java		diff \| blob \| history
src/jalview/ws/sifts/SiftsException.java		diff \| blob \| history
src/jalview/ws/sifts/SiftsSettings.java		diff \| blob \| history
test/jalview/analysis/SequenceIdMatcherTest.java		diff \| blob \| history
test/jalview/bin/ArgsParserTest.java		diff \| blob \| history
test/jalview/bin/CacheTest.java		diff \| blob \| history
test/jalview/controller/AlignViewControllerTest.java		diff \| blob \| history
test/jalview/datamodel/HiddenSequencesTest.java		diff \| blob \| history
test/jalview/datamodel/MappingTypeTest.java		diff \| blob \| history
test/jalview/datamodel/SequenceFeatureTest.java		diff \| blob \| history
test/jalview/datamodel/xdb/embl/EmblEntryTest.java		diff \| blob \| history
test/jalview/datamodel/xdb/embl/EmblTestHelper.java		diff \| blob \| history
test/jalview/ext/ensembl/EnsemblCdnaTest.java		diff \| blob \| history
test/jalview/ext/ensembl/EnsemblCdsTest.java		diff \| blob \| history
test/jalview/ext/ensembl/EnsemblGeneTest.java		diff \| blob \| history
test/jalview/ext/ensembl/EnsemblGenomeTest.java		diff \| blob \| history
test/jalview/ext/ensembl/EnsemblProteinTest.java		diff \| blob \| history
test/jalview/ext/ensembl/EnsemblRestClientTest.java		diff \| blob \| history
test/jalview/ext/ensembl/EnsemblSeqProxyAdapter.java		diff \| blob \| history
test/jalview/ext/ensembl/EnsemblSeqProxyTest.java		diff \| blob \| history
test/jalview/ext/ensembl/EnsemblXrefTest.java		diff \| blob \| history
test/jalview/ext/htsjdk/TestHtsContigDb.java		diff \| blob \| history
test/jalview/ext/jmol/JmolCommandsTest.java		diff \| blob \| history
test/jalview/ext/jmol/JmolVsJalviewPDBParserEndToEndTest.java		diff \| blob \| history
test/jalview/ext/so/SequenceOntologyTest.java		diff \| blob \| history
test/jalview/fts/core/FTSRestClientTest.java		diff \| blob \| history
test/jalview/gui/AlignFrameTest.java		diff \| blob \| history
test/jalview/gui/MouseEventDemo.java		diff \| blob \| history
test/jalview/io/FormatAdapterTest.java		diff \| blob \| history
test/jalview/io/Jalview2xmlBase.java		diff \| blob \| history
test/jalview/io/PfamFormatInputTest.java		diff \| blob \| history
test/jalview/io/SequenceAnnotationReportTest.java		diff \| blob \| history
test/jalview/io/gff/ExonerateHelperTest.java		diff \| blob \| history
test/jalview/io/gff/Gff3HelperTest.java		diff \| blob \| history
test/jalview/io/gff/GffHelperBaseTest.java		diff \| blob \| history
test/jalview/io/gff/GffHelperFactoryTest.java		diff \| blob \| history
test/jalview/io/gff/GffTests.java		diff \| blob \| history
test/jalview/io/gff/InterProScanHelperTest.java		diff \| blob \| history
test/jalview/schemes/FeatureColourTest.java		diff \| blob \| history
test/jalview/schemes/UserColourSchemeTest.java		diff \| blob \| history
test/jalview/util/ArrayUtilsTest.java		diff \| blob \| history
test/jalview/util/CaseInsensitiveStringTest.java		diff \| blob \| history
test/jalview/util/DnaUtilsTest.java		diff \| blob \| history
test/jalview/workers/AlignCalcManagerTest.java		diff \| blob \| history
test/jalview/ws/SequenceFetcherTest.java		diff \| blob \| history
test/jalview/ws/ebi/EBIFetchClientTest.java		diff \| blob \| history

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