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(parent: 15a454d) | patch
JAL-1780 JAL-653 Format/AppletFormat import and export pipeline regularised, uses...
authorJim Procter <jprocter@issues.jalview.org>
Mon, 22 Jun 2015 18:12:07 +0000 (19:12 +0100)
committerJim Procter <jprocter@issues.jalview.org>
Mon, 22 Jun 2015 18:20:47 +0000 (19:20 +0100)
commit6dd554fdbf34db6b79595d5027159d20225f4894
tree2fcda5b01fe77788046e5c7d02593e39265cc9aatree | snapshot
parent15a454d6de78056c057ab64c5932dda788da979acommit | diff
JAL-1780 JAL-653 Format/AppletFormat import and export pipeline regularised, uses AlignmentI where possible, and allows configuration via Alignment Panel and ExportSettings interface references
29 files changed:
src/MCview/PDBfile.java diff | blob | history
src/jalview/appletgui/APopupMenu.java diff | blob | history
src/jalview/appletgui/AlignFrame.java diff | blob | history
src/jalview/appletgui/CutAndPasteTransfer.java diff | blob | history
src/jalview/bin/JalviewLite.java diff | blob | history
src/jalview/bin/JalviewLiteURLRetrieve.java diff | blob | history
src/jalview/datamodel/ColumnSelection.java diff | blob | history
src/jalview/gui/AlignFrame.java diff | blob | history
src/jalview/gui/CutAndPasteTransfer.java diff | blob | history
src/jalview/gui/Desktop.java diff | blob | history
src/jalview/gui/PopupMenu.java diff | blob | history
src/jalview/gui/SequenceFetcher.java diff | blob | history
src/jalview/io/AlignFile.java diff | blob | history
src/jalview/io/AppletFormatAdapter.java diff | blob | history
src/jalview/io/FeaturesFile.java diff | blob | history
src/jalview/io/FileParse.java diff | blob | history
src/jalview/io/FormatAdapter.java diff | blob | history
src/jalview/io/Gff3File.java diff | blob | history
src/jalview/io/JSONFile.java diff | blob | history
src/jalview/jbgui/GFinder.java diff | blob | history
src/jalview/ws/dbsources/Uniprot.java diff | blob | history
src/jalview/ws/jws1/JPredThread.java diff | blob | history
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java diff | blob | history
test/jalview/analysis/AlignmentUtilsTests.java diff | blob | history
test/jalview/datamodel/AlignmentTest.java diff | blob | history
test/jalview/io/JSONFileTest.java diff | blob | history
test/jalview/io/PhylipFileTests.java diff | blob | history
test/jalview/io/StockholmFileTest.java diff | blob | history
test/jalview/util/MappingUtilsTest.java diff | blob | history