JAL-958 store normalised flag in jalview project
authorjprocter <jprocter@compbio.dundee.ac.uk>
Thu, 6 Sep 2012 17:15:20 +0000 (18:15 +0100)
committerjprocter <jprocter@compbio.dundee.ac.uk>
Thu, 6 Sep 2012 17:15:20 +0000 (18:15 +0100)
commit77441185ddcb1e85b0de8336ce513b2130c6b98b
tree46333e52b63c70cdb1dd253c8edad6f91ac0335f
parentea284df32dbcbbac847bcd251a070551d0f64061
JAL-958 store normalised flag in jalview project
110 files changed:
schemas/jalview.xsd
src/jalview/binding/Alignment.java
src/jalview/binding/Annotation.java
src/jalview/binding/AnnotationElement.java
src/jalview/binding/Colour.java
src/jalview/binding/Feature.java
src/jalview/binding/FeatureSettings.java
src/jalview/binding/Features.java
src/jalview/binding/JGroup.java
src/jalview/binding/JSeq.java
src/jalview/binding/JalviewModel.java
src/jalview/binding/JalviewModelSequence.java
src/jalview/binding/JalviewUserColours.java
src/jalview/binding/Pdbentry.java
src/jalview/binding/PdbentryItem.java
src/jalview/binding/Pdbids.java
src/jalview/binding/Property.java
src/jalview/binding/Sequence.java
src/jalview/binding/SequenceSet.java
src/jalview/binding/SequenceType.java
src/jalview/binding/Setting.java
src/jalview/binding/Tree.java
src/jalview/binding/UserColourScheme.java
src/jalview/binding/UserColours.java
src/jalview/binding/VAMSAS.java
src/jalview/binding/VamsasModel.java
src/jalview/binding/Viewport.java
src/jalview/schemabinding/version2/.castor.cdr
src/jalview/schemabinding/version2/AlcodMap.java
src/jalview/schemabinding/version2/Alcodon.java
src/jalview/schemabinding/version2/AlcodonFrame.java
src/jalview/schemabinding/version2/AnnotationColours.java
src/jalview/schemabinding/version2/AnnotationElement.java
src/jalview/schemabinding/version2/Colour.java
src/jalview/schemabinding/version2/DBRef.java
src/jalview/schemabinding/version2/Feature.java
src/jalview/schemabinding/version2/FeatureSettings.java
src/jalview/schemabinding/version2/Features.java
src/jalview/schemabinding/version2/Group.java
src/jalview/schemabinding/version2/HiddenColumns.java
src/jalview/schemabinding/version2/JGroup.java
src/jalview/schemabinding/version2/JSeq.java
src/jalview/schemabinding/version2/JalviewModel.java
src/jalview/schemabinding/version2/JalviewModelSequence.java
src/jalview/schemabinding/version2/JalviewUserColours.java
src/jalview/schemabinding/version2/MapListFrom.java
src/jalview/schemabinding/version2/MapListTo.java
src/jalview/schemabinding/version2/MapListType.java
src/jalview/schemabinding/version2/Mapping.java
src/jalview/schemabinding/version2/MappingChoice.java
src/jalview/schemabinding/version2/OtherData.java
src/jalview/schemabinding/version2/Pdbentry.java
src/jalview/schemabinding/version2/PdbentryItem.java
src/jalview/schemabinding/version2/Pdbids.java
src/jalview/schemabinding/version2/Property.java
src/jalview/schemabinding/version2/Sequence.java
src/jalview/schemabinding/version2/SequenceSet.java
src/jalview/schemabinding/version2/SequenceSetProperties.java
src/jalview/schemabinding/version2/SequenceType.java
src/jalview/schemabinding/version2/Setting.java
src/jalview/schemabinding/version2/StructureState.java
src/jalview/schemabinding/version2/ThresholdLine.java
src/jalview/schemabinding/version2/Tree.java
src/jalview/schemabinding/version2/UserColourScheme.java
src/jalview/schemabinding/version2/UserColours.java
src/jalview/schemabinding/version2/VAMSAS.java
src/jalview/schemabinding/version2/VamsasModel.java
src/jalview/schemabinding/version2/Viewport.java
src/jalview/schemabinding/version2/WebServiceParameterSet.java
src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java