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git://source.jalview.org / jalview.git / commit

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(parent: 37c9aad) | patch

author	kjvdheide <kjvanderheide@dundee.ac.uk>
	Thu, 16 Nov 2017 11:30:08 +0000 (11:30 +0000)
committer	kjvdheide <kjvanderheide@dundee.ac.uk>
	Thu, 16 Nov 2017 11:30:08 +0000 (11:30 +0000)
commit	99d91ca9589546151d5c1f3843c7de9c8f4d5990
tree	0335255361beb9a63cc5572d44e528e2acdd5584	tree \| snapshot
parent	37c9aad7e18aef35fb15a27b074eefd5fc9c972d	commit \| diff

JAL-2805 loads of file reorganizing, interfaces expanded

19 files changed:

.classpath		diff \| blob \| history
hs_err_pid28190.log	[new file with mode: 0644]	blob
src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java		diff \| blob \| history
src/jalview/ext/archaeopteryx/ArchaeopteryxTreeBuilder.java		diff \| blob \| history
src/jalview/ext/archaeopteryx/JalviewBinding.java	[moved from src/jalview/ext/archaeopteryx/AptxBinding.java with 96% similarity]	diff \| blob \| history
src/jalview/ext/archaeopteryx/LoadedTreeAssociation.java	[moved from src/jalview/ext/archaeopteryx/AptxNodeAssociation.java with 91% similarity]	diff \| blob \| history
src/jalview/ext/archaeopteryx/Tree.java	[new file with mode: 0644]	blob
src/jalview/ext/archaeopteryx/TreeNode.java	[new file with mode: 0644]	blob
src/jalview/ext/forester/DataConversions.java	[moved from src/jalview/ext/forester/ForesterDataConversions.java with 98% similarity]	diff \| blob \| history
src/jalview/ext/forester/ForesterMatrix.java		diff \| blob \| history
src/jalview/ext/forester/io/TreeParser.java	[moved from src/jalview/ext/forester/io/ForesterTreeParser.java with 78% similarity]	diff \| blob \| history
src/jalview/ext/treeviewer/ExternalLoadedTreeAssociationI.java	[moved from src/jalview/ext/archaeopteryx/ExternalLoadedTreeAssociationI.java with 72% similarity]	diff \| blob \| history
src/jalview/ext/treeviewer/ExternalTree.java	[new file with mode: 0644]	blob
src/jalview/ext/treeviewer/ExternalTreeBuilderI.java	[moved from src/jalview/ext/archaeopteryx/ExternalTreeBuilderI.java with 93% similarity]	diff \| blob \| history
src/jalview/ext/treeviewer/ExternalTreeNode.java	[new file with mode: 0644]	blob
src/jalview/ext/treeviewer/ExternalTreePanel.java	[new file with mode: 0644]	blob
src/jalview/ext/treeviewer/ExternalTreeParserI.java	[moved from src/jalview/ext/forester/io/ExternalTreeParserI.java with 91% similarity]	diff \| blob \| history
src/jalview/ext/treeviewer/ExternalTreeViewerBindingI.java	[moved from src/jalview/ext/archaeopteryx/ExternalTreeViewerBindingI.java with 96% similarity]	diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history