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(parent: b513684) | patch
JAL-3032 upgrade to Jmol 14.29.17; clearing of src2 directory
authorhansonr <hansonr@STO24954W.ad.stolaf.edu>
Sun, 22 Jul 2018 22:58:16 +0000 (17:58 -0500)
committerhansonr <hansonr@STO24954W.ad.stolaf.edu>
Sun, 22 Jul 2018 22:58:16 +0000 (17:58 -0500)
commita1225b9392dc7657d5cef12907385b07527d6122
treec9e6ebd4777822a929bcc2eaeda5b68d04f0ee1atree | snapshot
parentb513684c725997c77341f30ce4e584cf9f7cdfedcommit | diff
JAL-3032 upgrade to Jmol 14.29.17; clearing of src2 directory

probably should put .gitignore on src2. Sorry about that.
344 files changed:
src2/fr/orsay/lri/varna/README_SWINGJS.txt [deleted file] blob | history
src2/fr/orsay/lri/varna/VARNA.java [deleted file] blob | history
src2/fr/orsay/lri/varna/VARNAPanel.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/AlignmentDemo.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/BasicINI.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/FileNameExtensionFilter.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/NussinovDemo.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/NussinovDesignDemo.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/SecStrConsensus.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/SuperpositionDemo.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/VARNAConsoleDemo.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/VARNAEditor.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/VARNAGUI.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/VARNAOnlineDemo.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/VARNAPrinter.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/VARNAcmd.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqAnnotationDataModel.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqCellEditor.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqCellRenderer.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqFileModel.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqGUI.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqModel.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqNode.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqRNASecStrModel.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqTree.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/FragSeqTreeModel.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/fragseq/Watcher.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUI.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUICellEditor.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUIModel.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUIRenderer.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUITree.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/newGUI/VARNAGUITreeModel.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/newGUI/Watcher.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/templateEditor/Connection.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/templateEditor/Couple.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/templateEditor/GraphicalTemplateElement.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/templateEditor/Helix.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/templateEditor/MouseControler.java [deleted file] blob | history
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src2/fr/orsay/lri/varna/applications/templateEditor/TemplateEditorPanelUI.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/templateEditor/TemplateEdits.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/templateEditor/TemplatePanel.java [deleted file] blob | history
src2/fr/orsay/lri/varna/applications/templateEditor/UnpairedRegion.java [deleted file] blob | history
src2/fr/orsay/lri/varna/components/ActionEditor.java [deleted file] blob | history
src2/fr/orsay/lri/varna/components/ActionRenderer.java [deleted file] blob | history
src2/fr/orsay/lri/varna/components/AnnotationTableModel.java [deleted file] blob | history
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src2/fr/orsay/lri/varna/components/GradientEditorPanel.java [deleted file] blob | history
src2/fr/orsay/lri/varna/components/ReorderableJList.java [deleted file] blob | history
src2/fr/orsay/lri/varna/components/VARNAConsole.java [deleted file] blob | history
src2/fr/orsay/lri/varna/components/ZoomWindow.java [deleted file] blob | history
src2/fr/orsay/lri/varna/controlers/ControleurBPHeightIncrement.java [deleted file] blob | history
src2/fr/orsay/lri/varna/controlers/ControleurBaseSpecialColorEditor.java [deleted file] blob | history
src2/fr/orsay/lri/varna/controlers/ControleurBlinkingThread.java [deleted file] blob | history
src2/fr/orsay/lri/varna/controlers/ControleurBorder.java [deleted file] blob | history
src2/fr/orsay/lri/varna/controlers/ControleurClicMovement.java [deleted file] blob | history
src2/fr/orsay/lri/varna/controlers/ControleurDemoTextField.java [deleted file] blob | history
src2/fr/orsay/lri/varna/controlers/ControleurDraggedMolette.java [deleted file] blob | history
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src2/fr/orsay/lri/varna/controlers/ControleurJCheckBoxMenuItem.java [deleted file] blob | history
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src2/fr/orsay/lri/varna/controlers/ControleurTableAnnotations.java [deleted file] blob | history
src2/fr/orsay/lri/varna/controlers/ControleurVARNAPanelKeys.java [deleted file] blob | history
src2/fr/orsay/lri/varna/controlers/ControleurVueAnnotation.java [deleted file] blob | history
src2/fr/orsay/lri/varna/controlers/ControleurZoom.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionDrawingAlgorithm.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionEdgeEndpointAlreadyConnected.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionExportFailed.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionFileFormatOrSyntax.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionInvalidRNATemplate.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionJPEGEncoding.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionLoadingFailed.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionModeleStyleBaseSyntaxError.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionNAViewAlgorithm.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionNonEqualLength.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionParameterError.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionPermissionDenied.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionUnmatchedClosingParentheses.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionWritingForbidden.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionXMLGeneration.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/ExceptionXmlLoading.java [deleted file] blob | history
src2/fr/orsay/lri/varna/exceptions/MappingException.java [deleted file] blob | history
src2/fr/orsay/lri/varna/factories/RNAAlignment.java [deleted file] blob | history
src2/fr/orsay/lri/varna/factories/RNAFactory.java [deleted file] blob | history
src2/fr/orsay/lri/varna/factories/StockholmIO.java [deleted file] blob | history
src2/fr/orsay/lri/varna/interfaces/InterfaceParameterLoader.java [deleted file] blob | history
src2/fr/orsay/lri/varna/interfaces/InterfaceParseExport.java [deleted file] blob | history
src2/fr/orsay/lri/varna/interfaces/InterfaceVARNABasesListener.java [deleted file] blob | history
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src2/fr/orsay/lri/varna/interfaces/InterfaceVARNAObservable.java [deleted file] blob | history
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src2/fr/orsay/lri/varna/interfaces/InterfaceVARNASelectionListener.java [deleted file] blob | history
src2/fr/orsay/lri/varna/models/BaseList.java [deleted file] blob | history
src2/fr/orsay/lri/varna/models/FullBackup.java [deleted file] blob | history
src2/fr/orsay/lri/varna/models/VARNAConfig.java [deleted file] blob | history
src2/fr/orsay/lri/varna/models/VARNAConfigLoader.java [deleted file] blob | history
src2/fr/orsay/lri/varna/models/VARNAEdits.java [deleted file] blob | history
src2/fr/orsay/lri/varna/models/annotations/ChemProbAnnotation.java [deleted file] blob | history
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src2/fr/orsay/lri/varna/models/annotations/TextAnnotation.java [deleted file] blob | history
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src2/fr/orsay/lri/varna/models/export/SVGExport.java [deleted file] blob | history
src2/fr/orsay/lri/varna/models/export/SecStrDrawingProducer.java [deleted file] blob | history
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src2/fr/orsay/lri/varna/models/export/TikzExport.java [deleted file] blob | history
src2/fr/orsay/lri/varna/models/export/VueVARNAGraphics.java [deleted file] blob | history
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src2/fr/orsay/lri/varna/models/geom/ComputeArcCenter.java [deleted file] blob | history
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