JAL-1479 refactored SequenceI interface - changed getDBRef() to getDBRefs() since...
authortcofoegbu <tcnofoegbu@dundee.ac.uk>
Thu, 15 Oct 2015 14:16:37 +0000 (15:16 +0100)
committertcofoegbu <tcnofoegbu@dundee.ac.uk>
Thu, 15 Oct 2015 14:16:37 +0000 (15:16 +0100)
commita21b84a669a9620f6943b9b5054e8756cb6f0687
tree2d3901cd698b23ad3c95a11810aa7b912ef950fa
parent1503bcb2b548b7f6bc11bcbf081455ab94839099
JAL-1479 refactored SequenceI interface - changed getDBRef() to getDBRefs() since it returns an array of DBRefEntry
28 files changed:
src/jalview/analysis/AlignmentUtils.java
src/jalview/analysis/CrossRef.java
src/jalview/analysis/Dna.java
src/jalview/analysis/SequenceIdMatcher.java
src/jalview/api/DBRefEntryI.java
src/jalview/appletgui/APopupMenu.java
src/jalview/datamodel/DBRefEntry.java
src/jalview/datamodel/Sequence.java
src/jalview/datamodel/SequenceGroup.java
src/jalview/datamodel/SequenceI.java
src/jalview/gui/Jalview2XML.java
src/jalview/gui/PopupMenu.java
src/jalview/gui/SequenceFetcher.java
src/jalview/gui/StructureChooser.java
src/jalview/gui/TreePanel.java
src/jalview/io/ModellerDescription.java
src/jalview/io/SequenceAnnotationReport.java
src/jalview/io/StockholmFile.java
src/jalview/io/WSWUBlastClient.java
src/jalview/io/vamsas/Datasetsequence.java
src/jalview/io/vamsas/Sequencemapping.java
src/jalview/structure/StructureSelectionManager.java
src/jalview/ws/DBRefFetcher.java
src/jalview/ws/DasSequenceFeatureFetcher.java
src/jalview/ws/seqfetcher/ASequenceFetcher.java
test/jalview/analysis/AlignmentUtilsTests.java
test/jalview/util/DBRefUtilsTest.java
test/jalview/ws/seqfetcher/DbRefFetcherTest.java