JAL-4134 JAL-3855 store/restore groups, tree and threshold used to cluster a PAE...
authorJames Procter <j.procter@dundee.ac.uk>
Wed, 15 Mar 2023 10:54:19 +0000 (10:54 +0000)
committerJames Procter <j.procter@dundee.ac.uk>
Wed, 15 Mar 2023 10:54:19 +0000 (10:54 +0000)
commita81e74154d35e10958b58c3c9411aa9ee21880a6
tree736f21eb4dbb87ada170dd477027668ebd3843d6
parent947f3eec987c61ea044731137930ef7d0c89128f
JAL-4134 JAL-3855 store/restore groups, tree and threshold used to cluster a PAE matrix
74 files changed:
schemas/vamsas.xsd
src/jalview/datamodel/ContactMatrixI.java
src/jalview/project/Jalview2XML.java
src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java
src/jalview/xml/binding/embl/EntrySetType.java
src/jalview/xml/binding/embl/EntryType.java
src/jalview/xml/binding/embl/ObjectFactory.java
src/jalview/xml/binding/embl/ROOT.java
src/jalview/xml/binding/embl/XrefType.java
src/jalview/xml/binding/jalview/AlcodonFrame.java
src/jalview/xml/binding/jalview/Annotation.java
src/jalview/xml/binding/jalview/AnnotationColourScheme.java
src/jalview/xml/binding/jalview/AnnotationElement.java
src/jalview/xml/binding/jalview/DoubleMatrix.java
src/jalview/xml/binding/jalview/DoubleVector.java
src/jalview/xml/binding/jalview/Feature.java
src/jalview/xml/binding/jalview/FeatureMatcher.java
src/jalview/xml/binding/jalview/FeatureMatcherSet.java
src/jalview/xml/binding/jalview/FilterBy.java
src/jalview/xml/binding/jalview/JalviewModel.java
src/jalview/xml/binding/jalview/JalviewUserColours.java
src/jalview/xml/binding/jalview/MapListType.java
src/jalview/xml/binding/jalview/Mapping.java
src/jalview/xml/binding/jalview/MatrixType.java
src/jalview/xml/binding/jalview/NoValueColour.java
src/jalview/xml/binding/jalview/ObjectFactory.java
src/jalview/xml/binding/jalview/PcaDataType.java
src/jalview/xml/binding/jalview/Pdbentry.java
src/jalview/xml/binding/jalview/Sequence.java
src/jalview/xml/binding/jalview/SequenceSet.java
src/jalview/xml/binding/jalview/SequenceType.java
src/jalview/xml/binding/jalview/ThresholdType.java
src/jalview/xml/binding/jalview/VAMSAS.java
src/jalview/xml/binding/jalview/WebServiceParameterSet.java
src/jalview/xml/binding/jalview/package-info.java
src/jalview/xml/binding/uniprot/CitationType.java
src/jalview/xml/binding/uniprot/CofactorType.java
src/jalview/xml/binding/uniprot/CommentType.java
src/jalview/xml/binding/uniprot/ConsortiumType.java
src/jalview/xml/binding/uniprot/DbReferenceType.java
src/jalview/xml/binding/uniprot/Entry.java
src/jalview/xml/binding/uniprot/EventType.java
src/jalview/xml/binding/uniprot/EvidenceType.java
src/jalview/xml/binding/uniprot/EvidencedStringType.java
src/jalview/xml/binding/uniprot/FeatureType.java
src/jalview/xml/binding/uniprot/GeneLocationType.java
src/jalview/xml/binding/uniprot/GeneNameType.java
src/jalview/xml/binding/uniprot/GeneType.java
src/jalview/xml/binding/uniprot/ImportedFromType.java
src/jalview/xml/binding/uniprot/InteractantType.java
src/jalview/xml/binding/uniprot/IsoformType.java
src/jalview/xml/binding/uniprot/KeywordType.java
src/jalview/xml/binding/uniprot/LocationType.java
src/jalview/xml/binding/uniprot/MoleculeType.java
src/jalview/xml/binding/uniprot/NameListType.java
src/jalview/xml/binding/uniprot/ObjectFactory.java
src/jalview/xml/binding/uniprot/OrganismNameType.java
src/jalview/xml/binding/uniprot/OrganismType.java
src/jalview/xml/binding/uniprot/PersonType.java
src/jalview/xml/binding/uniprot/PhysiologicalReactionType.java
src/jalview/xml/binding/uniprot/PositionType.java
src/jalview/xml/binding/uniprot/PropertyType.java
src/jalview/xml/binding/uniprot/ProteinExistenceType.java
src/jalview/xml/binding/uniprot/ProteinType.java
src/jalview/xml/binding/uniprot/ReactionType.java
src/jalview/xml/binding/uniprot/ReferenceType.java
src/jalview/xml/binding/uniprot/SequenceType.java
src/jalview/xml/binding/uniprot/SourceDataType.java
src/jalview/xml/binding/uniprot/SourceType.java
src/jalview/xml/binding/uniprot/StatusType.java
src/jalview/xml/binding/uniprot/SubcellularLocationType.java
src/jalview/xml/binding/uniprot/Uniprot.java
src/jalview/xml/binding/uniprot/package-info.java
test/jalview/project/Jalview2xmlTests.java