source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	gmungoc <g.m.carstairs@dundee.ac.uk>
	Wed, 30 May 2018 11:23:18 +0000 (12:23 +0100)
committer	gmungoc <g.m.carstairs@dundee.ac.uk>
	Wed, 30 May 2018 11:23:18 +0000 (12:23 +0100)
commit	ac4a041c0706baca6fd04570bf37e8264457ea86
tree	3837349d1c172cd2cbccfaa498ee852cad6c7f2e	tree \| snapshot
parent	af1669bc2783d70a77be1349b87cf06f6e25b878	commit \| diff

Update spike branch to latest (HMMSearch file chooser arg)

54 files changed:

RELEASE		diff \| blob \| history
THIRDPARTYLIBS		diff \| blob \| history
build.xml		diff \| blob \| history
examples/testdata/test.aln		diff \| blob \| history
help/help.jhm		diff \| blob \| history
help/html/releases.html		diff \| blob \| history
resources/lang/Messages.properties		diff \| blob \| history
resources/lang/Messages_es.properties		diff \| blob \| history
resources/uniprot_mapping.xml		diff \| blob \| history
src/ext/edu/ucsf/rbvi/strucviz2/StructureManager.java		diff \| blob \| history
src/jalview/bin/Jalview.java		diff \| blob \| history
src/jalview/datamodel/HiddenCursorPosition.java		diff \| blob \| history
src/jalview/datamodel/RangeElementsIterator.java		diff \| blob \| history
src/jalview/datamodel/RangeIterator.java		diff \| blob \| history
src/jalview/datamodel/StartRegionIterator.java		diff \| blob \| history
src/jalview/datamodel/VisibleContigsIterator.java		diff \| blob \| history
src/jalview/datamodel/xdb/uniprot/UniprotFeature.java		diff \| blob \| history
src/jalview/ext/jmol/JmolParser.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AlignmentPanel.java		diff \| blob \| history
src/jalview/gui/Desktop.java		diff \| blob \| history
src/jalview/gui/OptsAndParamsPage.java		diff \| blob \| history
src/jalview/gui/SeqCanvas.java		diff \| blob \| history
src/jalview/hmmer/HMMERParamStore.java		diff \| blob \| history
src/jalview/hmmer/HMMSearch.java		diff \| blob \| history
src/jalview/io/AlignFile.java		diff \| blob \| history
src/jalview/io/ClustalFile.java		diff \| blob \| history
src/jalview/io/FeaturesFile.java		diff \| blob \| history
src/jalview/io/FileLoader.java		diff \| blob \| history
src/jalview/io/FileParse.java		diff \| blob \| history
src/jalview/jbgui/GAlignFrame.java		diff \| blob \| history
src/jalview/jbgui/GPreferences.java		diff \| blob \| history
src/jalview/jbgui/GStructureChooser.java		diff \| blob \| history
src/jalview/structure/StructureSelectionManager.java		diff \| blob \| history
src/jalview/util/FileUtils.java		diff \| blob \| history
src/jalview/ws/params/ValueConstrainI.java		diff \| blob \| history
src/jalview/ws/params/simple/FileParameter.java	[new file with mode: 0644]	blob
src/jalview/ws/params/simple/RadioChoiceParameter.java	[new file with mode: 0644]	blob
src/org/stackoverflowusers/file/WindowsShortcut.java	[new file with mode: 0644]	blob
test/jalview/gui/SeqCanvasTest.java		diff \| blob \| history
test/jalview/io/ClustalFileTest.java	[new file with mode: 0644]	blob
test/jalview/io/FileLoaderTest.java		diff \| blob \| history
test/jalview/renderer/OverviewRendererTest.java		diff \| blob \| history
test/jalview/renderer/seqfeatures/FeatureRendererTest.java		diff \| blob \| history
test/jalview/structure/Mapping.java		diff \| blob \| history
test/jalview/structure/StructureMappingTest.java		diff \| blob \| history
test/jalview/util/FileUtilsTest.java	[new file with mode: 0644]	blob
test/jalview/ws/dbsources/PfamFullTest.java		diff \| blob \| history
test/jalview/ws/dbsources/PfamSeedTest.java		diff \| blob \| history
test/jalview/ws/dbsources/RfamFullTest.java		diff \| blob \| history
test/jalview/ws/dbsources/RfamSeedTest.java		diff \| blob \| history
test/jalview/ws/dbsources/UniprotTest.java		diff \| blob \| history
utils/InstallAnywhere/Jalview.iap_xml		diff \| blob \| history
utils/InstallAnywhere/jalview_buildinstaller.xml		diff \| blob \| history

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