JAL-2360 refactoring for JalviewColourScheme enum,
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 16 Dec 2016 09:37:11 +0000 (09:37 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 16 Dec 2016 09:37:11 +0000 (09:37 +0000)
commitb0cee3aaf7d8873910939f97b6acb217d518968d
treec61de59931fdda4735ec8d8497569a89b893aeaa
parent9d15a20b1f34c76427da5ec9274ff97a1ca49393
JAL-2360 refactoring for JalviewColourScheme enum,
ColourSchemeI.getSchemeName(), isApplicableTo()
55 files changed:
examples/appletParameters.html
src/jalview/appletgui/FeatureRenderer.java
src/jalview/appletgui/TreeCanvas.java
src/jalview/bin/Cache.java
src/jalview/bin/JalviewLite.java
src/jalview/ext/rbvi/chimera/ChimeraCommands.java
src/jalview/gui/AlignFrame.java
src/jalview/gui/ChimeraViewFrame.java
src/jalview/gui/FeatureRenderer.java
src/jalview/gui/Jalview2XML.java
src/jalview/gui/PopupMenu.java
src/jalview/gui/Preferences.java
src/jalview/gui/TreeCanvas.java
src/jalview/gui/UserDefinedColours.java
src/jalview/io/AnnotationFile.java
src/jalview/io/FeaturesFile.java
src/jalview/io/JSONFile.java
src/jalview/jbgui/GAlignFrame.java
src/jalview/schemes/AnnotationColourGradient.java
src/jalview/schemes/Blosum62ColourScheme.java
src/jalview/schemes/BuriedColourScheme.java
src/jalview/schemes/ClustalxColourScheme.java
src/jalview/schemes/ColourSchemeI.java
src/jalview/schemes/ColourSchemeProperty.java
src/jalview/schemes/CovariationColourScheme.java
src/jalview/schemes/FeatureColour.java
src/jalview/schemes/FollowerColourScheme.java
src/jalview/schemes/HelixColourScheme.java
src/jalview/schemes/HydrophobicColourScheme.java
src/jalview/schemes/JalviewColourScheme.java [new file with mode: 0644]
src/jalview/schemes/NucleotideColourScheme.java
src/jalview/schemes/PIDColourScheme.java
src/jalview/schemes/PurinePyrimidineColourScheme.java
src/jalview/schemes/RNAHelicesColour.java
src/jalview/schemes/RNAInteractionColourScheme.java
src/jalview/schemes/ResidueColourScheme.java
src/jalview/schemes/ScoreColourScheme.java
src/jalview/schemes/StrandColourScheme.java
src/jalview/schemes/TCoffeeColourScheme.java
src/jalview/schemes/TaylorColourScheme.java
src/jalview/schemes/TurnColourScheme.java
src/jalview/schemes/UserColourScheme.java
src/jalview/schemes/ZappoColourScheme.java
src/jalview/util/ColorUtils.java
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
src/jalview/ws/jws2/AADisorderClient.java
test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java
test/jalview/gui/AlignViewportTest.java
test/jalview/io/Jalview2xmlTests.java
test/jalview/schemes/ColourSchemePropertyTest.java [new file with mode: 0644]
test/jalview/schemes/FeatureColourTest.java
test/jalview/schemes/JalviewColourSchemeTest.java [new file with mode: 0644]
test/jalview/schemes/ResidueColourSchemeTest.java
test/jalview/schemes/UserColourSchemeTest.java
test/jalview/util/ColorUtilsTest.java