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author	jprocter <jprocter@compbio.dundee.ac.uk>
	Wed, 19 Oct 2011 17:34:14 +0000 (18:34 +0100)
committer	jprocter <jprocter@compbio.dundee.ac.uk>
	Fri, 21 Oct 2011 14:53:25 +0000 (15:53 +0100)
commit	b65330720abd1329eac5fddbed9516b8302abe52
tree	6856fd29e4ada9c9b193b03d618ce3fd87af6681	tree \| snapshot
parent	0ff82a5d931e19c572695992cd0f59346819db56	commit \| diff

Refactored alignment viewport to use common base, extended viewport API with getters for calculation manager and calc parameters, and refactored conservation to use AlignWorker interface.