source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	Jim Procter <jprocter@issues.jalview.org>
	Thu, 10 Sep 2015 09:34:38 +0000 (10:34 +0100)
committer	Jim Procter <jprocter@issues.jalview.org>
	Thu, 10 Sep 2015 10:06:03 +0000 (11:06 +0100)
commit	db4eacee27b836db4126dca551887bfc6652d72a
tree	8555b79f5ae3ae61a7ef4b9999ac8bd36fa3e973	tree \| snapshot
parent	52288466dd1e71946a06fd1e6ea15fa8e652c693	commit \| diff

JAL-1645 licencing for new files in src

77 files changed:

src/jalview/analysis/AlignmentAnnotationUtils.java		diff \| blob \| history
src/jalview/analysis/AnnotationSorter.java		diff \| blob \| history
src/jalview/analysis/CodingUtils.java		diff \| blob \| history
src/jalview/analysis/CodonComparator.java		diff \| blob \| history
src/jalview/analysis/scoremodels/FeatureScoreModel.java		diff \| blob \| history
src/jalview/api/BuildDetailsI.java		diff \| blob \| history
src/jalview/api/ComplexAlignFile.java		diff \| blob \| history
src/jalview/api/FeatureSettingsControllerI.java		diff \| blob \| history
src/jalview/api/FeatureSettingsModelI.java		diff \| blob \| history
src/jalview/api/FeaturesDisplayedI.java		diff \| blob \| history
src/jalview/api/SplitContainerI.java		diff \| blob \| history
src/jalview/api/ViewStyleI.java		diff \| blob \| history
src/jalview/api/analysis/ViewBasedAnalysisI.java		diff \| blob \| history
src/jalview/appletgui/AnnotationColumnChooser.java		diff \| blob \| history
src/jalview/appletgui/AnnotationRowFilter.java		diff \| blob \| history
src/jalview/appletgui/SplitFrame.java		diff \| blob \| history
src/jalview/appletgui/TitledPanel.java		diff \| blob \| history
src/jalview/bin/BuildDetails.java		diff \| blob \| history
src/jalview/controller/FeatureSettingsController.java		diff \| blob \| history
src/jalview/controller/FeatureSettingsControllerGuiI.java		diff \| blob \| history
src/jalview/datamodel/ASequence.java		diff \| blob \| history
src/jalview/datamodel/ASequenceI.java		diff \| blob \| history
src/jalview/datamodel/AlignedCodon.java		diff \| blob \| history
src/jalview/datamodel/AlignmentExportData.java		diff \| blob \| history
src/jalview/datamodel/IncompleteCodonException.java		diff \| blob \| history
src/jalview/datamodel/RnaViewerModel.java		diff \| blob \| history
src/jalview/datamodel/SequenceDummy.java		diff \| blob \| history
src/jalview/datamodel/StructureViewerModel.java		diff \| blob \| history
src/jalview/exceptions/JalviewException.java		diff \| blob \| history
src/jalview/exceptions/NoFileSelectedException.java		diff \| blob \| history
src/jalview/ext/rbvi/chimera/ChimeraListener.java		diff \| blob \| history
src/jalview/ext/varna/RnaModel.java		diff \| blob \| history
src/jalview/gui/AlignExportSettings.java		diff \| blob \| history
src/jalview/gui/AnnotationChooser.java		diff \| blob \| history
src/jalview/gui/AnnotationRowFilter.java		diff \| blob \| history
src/jalview/gui/HTMLOptions.java		diff \| blob \| history
src/jalview/gui/Help.java		diff \| blob \| history
src/jalview/gui/JalviewChimeraBindingModel.java		diff \| blob \| history
src/jalview/gui/ProgressBar.java		diff \| blob \| history
src/jalview/gui/SplitFrame.java		diff \| blob \| history
src/jalview/gui/StructureViewerBase.java		diff \| blob \| history
src/jalview/httpserver/AbstractRequestHandler.java		diff \| blob \| history
src/jalview/httpserver/HttpServer.java		diff \| blob \| history
src/jalview/io/BioJsHTMLOutput.java		diff \| blob \| history
src/jalview/io/Gff3File.java		diff \| blob \| history
src/jalview/io/HtmlSvgOutput.java		diff \| blob \| history
src/jalview/io/PhylipFile.java		diff \| blob \| history
src/jalview/jbgui/GAlignExportSettings.java		diff \| blob \| history
src/jalview/jbgui/GSplitFrame.java		diff \| blob \| history
src/jalview/jbgui/PDBDocFieldPreferences.java		diff \| blob \| history
src/jalview/json/binding/biojs/BioJSReleasePojo.java		diff \| blob \| history
src/jalview/json/binding/biojs/BioJSRepositoryPojo.java		diff \| blob \| history
src/jalview/json/binding/biojson/v1/AlignmentAnnotationPojo.java		diff \| blob \| history
src/jalview/json/binding/biojson/v1/AlignmentPojo.java		diff \| blob \| history
src/jalview/json/binding/biojson/v1/AnnotationPojo.java		diff \| blob \| history
src/jalview/json/binding/biojson/v1/JalviewBioJsColorSchemeMapper.java		diff \| blob \| history
src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java		diff \| blob \| history
src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java		diff \| blob \| history
src/jalview/json/binding/biojson/v1/SequencePojo.java		diff \| blob \| history
src/jalview/math/AlignmentDimension.java		diff \| blob \| history
src/jalview/renderer/seqfeatures/FeatureRenderer.java		diff \| blob \| history
src/jalview/rest/RestHandler.java		diff \| blob \| history
src/jalview/structure/AtomSpec.java		diff \| blob \| history
src/jalview/structure/CommandListener.java		diff \| blob \| history
src/jalview/structures/models/AAStructureBindingModel.java		diff \| blob \| history
src/jalview/util/MappingUtils.java		diff \| blob \| history
src/jalview/util/ReverseListIterator.java		diff \| blob \| history
src/jalview/util/StringUtils.java		diff \| blob \| history
src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java		diff \| blob \| history
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java		diff \| blob \| history
src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java		diff \| blob \| history
src/jalview/viewmodel/seqfeatures/FeatureSettingsModel.java		diff \| blob \| history
src/jalview/viewmodel/seqfeatures/FeaturesDisplayed.java		diff \| blob \| history
src/jalview/viewmodel/styles/ViewStyle.java		diff \| blob \| history
src/jalview/workers/ComplementConsensusThread.java		diff \| blob \| history
src/jalview/ws/dbsources/PDBRestClient.java		diff \| blob \| history
src/jalview/ws/jws2/AbstractJabaCalcWorker.java		diff \| blob \| history

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