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(parent: 4b1c969) | patch
3253-omnibus save JAL-3253-applet-SwingJS-omnibus
authorBobHanson <hansonr@stolaf.edu>
Thu, 9 Apr 2020 17:53:04 +0000 (12:53 -0500)
committerBobHanson <hansonr@stolaf.edu>
Thu, 9 Apr 2020 17:53:04 +0000 (12:53 -0500)
commit6200addf078b7f7ace90597dc056dafc7fc602c1
tree5195c1d23e7308ad49082f3412924833eb22854atree | snapshot
parent4b1c969e87feaefd4fb9c49ba3d6b828b3ce1a9ccommit | diff
3253-omnibus save
83 files changed:
src/jalview/analysis/AlignmentUtils.java diff | blob | history
src/jalview/analysis/CrossRef.java diff | blob | history
src/jalview/analysis/scoremodels/FeatureDistanceModel.java diff | blob | history
src/jalview/api/AlignViewControllerGuiI.java diff | blob | history
src/jalview/api/AlignViewportI.java diff | blob | history
src/jalview/api/FeatureRenderer.java diff | blob | history
src/jalview/api/SplitContainerI.java diff | blob | history
src/jalview/api/ViewStyleI.java diff | blob | history
src/jalview/appletgui/AlignFrame.java diff | blob | history
src/jalview/appletgui/AlignViewport.java diff | blob | history
src/jalview/appletgui/SeqPanel.java diff | blob | history
src/jalview/bin/Jalview.java diff | blob | history
src/jalview/bin/JalviewAppLoader.java diff | blob | history
src/jalview/controller/AlignViewController.java diff | blob | history
src/jalview/controller/FeatureSettingsControllerGuiI.java diff | blob | history
src/jalview/datamodel/DBRefEntry.java diff | blob | history
src/jalview/datamodel/GeneLociI.java diff | blob | history
src/jalview/datamodel/GeneLocus.java [new file with mode: 0644] blob
src/jalview/datamodel/MappedFeatures.java [new file with mode: 0644] blob
src/jalview/datamodel/Sequence.java diff | blob | history
src/jalview/datamodel/SequenceFeature.java diff | blob | history
src/jalview/ext/ensembl/EnsemblCdna.java diff | blob | history
src/jalview/ext/ensembl/EnsemblFeatures.java diff | blob | history
src/jalview/ext/ensembl/EnsemblGene.java diff | blob | history
src/jalview/ext/ensembl/EnsemblInfo.java diff | blob | history
src/jalview/ext/ensembl/EnsemblLookup.java diff | blob | history
src/jalview/ext/ensembl/EnsemblMap.java diff | blob | history
src/jalview/ext/ensembl/EnsemblProtein.java diff | blob | history
src/jalview/ext/ensembl/EnsemblRestClient.java diff | blob | history
src/jalview/ext/ensembl/EnsemblSeqProxy.java diff | blob | history
src/jalview/ext/ensembl/EnsemblSequenceFetcher.java diff | blob | history
src/jalview/ext/htsjdk/VCFReader.java diff | blob | history
src/jalview/ext/jmol/JalviewJmolBinding.java diff | blob | history
src/jalview/ext/paradise/Annotate3D.java diff | blob | history
src/jalview/ext/rbvi/chimera/ChimeraCommands.java diff | blob | history
src/jalview/ext/so/SequenceOntology.java diff | blob | history
src/jalview/gui/AlignFrame.java diff | blob | history
src/jalview/gui/AlignViewport.java diff | blob | history
src/jalview/gui/AnnotationExporter.java diff | blob | history
src/jalview/gui/CrossRefAction.java diff | blob | history
src/jalview/gui/Desktop.java diff | blob | history
src/jalview/gui/FeatureSettings.java diff | blob | history
src/jalview/gui/IdPanel.java diff | blob | history
src/jalview/gui/PopupMenu.java diff | blob | history
src/jalview/gui/SeqPanel.java diff | blob | history
src/jalview/gui/SplashScreen.java diff | blob | history
src/jalview/gui/SplitFrame.java diff | blob | history
src/jalview/gui/VamsasApplication.java diff | blob | history
src/jalview/io/FeaturesFile.java diff | blob | history
src/jalview/io/FileLoader.java diff | blob | history
src/jalview/io/SequenceAnnotationReport.java diff | blob | history
src/jalview/io/gff/Gff2Helper.java diff | blob | history
src/jalview/io/gff/Gff3Helper.java diff | blob | history
src/jalview/io/gff/GffHelperBase.java diff | blob | history
src/jalview/io/gff/GffHelperI.java diff | blob | history
src/jalview/io/gff/SequenceOntologyLite.java diff | blob | history
src/jalview/io/vcf/VCFLoader.java diff | blob | history
src/jalview/project/Jalview2XML.java diff | blob | history
src/jalview/structure/SequenceListener.java diff | blob | history
src/jalview/structure/StructureSelectionManager.java diff | blob | history
src/jalview/util/MapList.java diff | blob | history
src/jalview/util/Platform.java diff | blob | history
src/jalview/util/StringUtils.java diff | blob | history
src/jalview/viewmodel/AlignmentViewport.java diff | blob | history
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java diff | blob | history
src/jalview/viewmodel/styles/ViewStyle.java diff | blob | history
src/jalview/ws/DBRefFetcher.java diff | blob | history
src/jalview/ws/dbsources/EmblXmlSource.java diff | blob | history
swingjs/SwingJS-site.zip diff | blob | history
swingjs/net.sf.j2s.core-j11.jar diff | blob | history
swingjs/timestamp diff | blob | history
swingjs/ver/3.2.9/SwingJS-site.zip diff | blob | history
swingjs/ver/3.2.9/net.sf.j2s.core-j11.jar diff | blob | history
swingjs/ver/3.2.9/timestamp diff | blob | history
test/jalview/analysis/AlignmentUtilsTests.java diff | blob | history
test/jalview/datamodel/SequenceFeatureTest.java diff | blob | history
test/jalview/ext/ensembl/EnsemblSeqProxyTest.java diff | blob | history
test/jalview/ext/jmol/JmolViewerTest.java diff | blob | history
test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java diff | blob | history
test/jalview/io/FeaturesFileTest.java diff | blob | history
test/jalview/io/FileLoaderTest.java diff | blob | history
test/jalview/io/SequenceAnnotationReportTest.java diff | blob | history
test/jalview/structure/Mapping.java diff | blob | history