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JAL-3436 save filePath from fileObject, tidy updateRecentlyOpened
[jalview.git] / src / jalview / gui / AlignFrame.java
2019-10-17 gmungocJAL-3436 save filePath from fileObject, tidy updateRece... blob | commitdiff
2019-10-17 gmungocJAL-3436 move/rename/private fields refactoring only blob | commitdiff | diff to current
2019-10-08 hansonrJAL-3436 fix for reload not reloading files Jalview-jJS/JAL-3253-applet-JAL-3436 blob | commitdiff | diff to current
2019-10-06 hansonrJAL-3451 JalviewJS embedded mode not resizing blob | commitdiff | diff to current
2019-09-26 gmungocJAL-3383 removing colour caching (to a separate branch) blob | commitdiff | diff to current
2019-09-24 gmungocJAL-3383 tidy up NCList and alternatives blob | commitdiff | diff to current
2019-09-23 hansonrJAL-3435 AlignFrame not setting JInternalFrameListener... blob | commitdiff | diff to current
2019-07-30 hansonrJAL-3253-applet JAL-3383 blob | commitdiff | diff to current
2019-07-29 hansonrJAL-3369 JAL-3253-applet adds embedded dim checking... blob | commitdiff | diff to current
2019-07-29 hansonrJAL-3387 no-annotation too early blob | commitdiff | diff to current
2019-07-24 hansonrJAL-3253-applet adds NOMENUBAR, NOSTATUS, NOCALCULATION... blob | commitdiff | diff to current
2019-07-24 hansonrJAL-3374 "noannotation" and menu sync blob | commitdiff | diff to current
2019-07-18 hansonrJAL-3269 JAL-3370 JalviewJS interface upgrade blob | commitdiff | diff to current
2019-05-19 hansonrJalview-JS/JAL-3253-applet adds AlignFrameI empty inter... blob | commitdiff | diff to current
2019-05-17 hansonrJalview-JS/JAL-3253-applet additional static final... blob | commitdiff | diff to current
2019-05-17 hansonrJalview-JS/JAL-3253-applet adding more applet parameter... blob | commitdiff | diff to current
2019-05-16 hansonrJalview-JS/JAL-3253 applet param GROUPS blob | commitdiff | diff to current
2019-05-16 hansonrJalview-JS/JAL-3253 applet params jpredfile, jnetfile blob | commitdiff | diff to current
2019-05-10 hansonrJAL-3253 jalview.bin.Instance streamlining blob | commitdiff | diff to current
2019-05-10 hansonrJAL-3253 jalview.bin.Instance handles all singleton... blob | commitdiff | diff to current
2019-05-09 hansonrJAL-3253 preliminary static fixes for JavaScript part... blob | commitdiff | diff to current
2019-05-08 hansonrJAL-3253 preliminary static fixes for JavaScript part 2 blob | commitdiff | diff to current
2019-05-08 hansonrJAL-3253 preliminary static fixes for JavaScript blob | commitdiff | diff to current
2019-04-18 hansonrCorrects incorrect calls to ViewportRanges.setEndSeq() blob | commitdiff | diff to current
2019-04-16 hansonrcaching of DnD files dropped blob | commitdiff | diff to current
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... blob | commitdiff | diff to current
2019-03-31 hansonrclean up implicit object refs blob | commitdiff | diff to current
2019-03-27 hansonrisJS cleanup blob | commitdiff | diff to current
2019-03-23 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2019-03-23 gmungocJAL-1889 explicit recalc of geometry for scale left... bug/JAL-1889serverTestSuite blob | commitdiff | diff to current
2019-03-20 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2019-03-20 gmungocJAL-3093 fine tuning of SeqPanel tooltip blob | commitdiff | diff to current
2019-03-14 gmungocJAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS blob | commitdiff | diff to current
2019-03-13 gmungocJAL-3141 fix up merge artefact so BackupFilesTest passes blob | commitdiff | diff to current
2019-03-13 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... blob | commitdiff | diff to current
2019-03-07 gmungocMerge branch 'feature/JAL-3180colourAnnotationMenu... blob | commitdiff | diff to current
2019-03-07 gmungocJAL-2250 default Apply Colour to All Groups selected blob | commitdiff | diff to current
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620a... blob | commitdiff | diff to current
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... blob | commitdiff | diff to current
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'... blob | commitdiff | diff to current
2019-03-01 gmungocMerge branch 'bug/JAL-3158selectionBroadcasts' into... blob | commitdiff | diff to current
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b... blob | commitdiff | diff to current
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 blob | commitdiff | diff to current
2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without dupli... blob | commitdiff | diff to current
2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to positi... blob | commitdiff | diff to current
2019-02-05 gmungocJAL-3048 JS-compatible confirm dialog on delete all blob | commitdiff | diff to current
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... blob | commitdiff | diff to current
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur... blob | commitdiff | diff to current
2019-01-18 hansonrcanvas line/font/pixel fixes; menu accelerators; blob | commitdiff | diff to current
2019-01-15 hansonrremoval of AlignmentFrame lines blob | commitdiff | diff to current
2019-01-09 gmungocJAL-3032 refine 'empty status message' test (JS issue... blob | commitdiff | diff to current
2019-01-09 hansonrcomment added in relation to status bar blob | commitdiff | diff to current
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour... blob | commitdiff | diff to current
2018-12-18 gmungocJAL-3048 DialogRunnerI reduced to minimal implementation blob | commitdiff | diff to current
2018-12-10 gmungocJAL-3048 wip externalise trigger from RunResponse blob | commitdiff | diff to current
2018-12-10 gmungocJAL-3048 DialogRunner changes (wip) blob | commitdiff | diff to current
2018-12-06 gmungocJAL-3048 response() renamed addResponse(); checkstyle... blob | commitdiff | diff to current
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts blob | commitdiff | diff to current
2018-11-08 gmungocJAL-3048 use JalviewJS compatible JalviewFileChooser... blob | commitdiff | diff to current
2018-10-31 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into... feature/JAL-3144noJTree blob | commitdiff | diff to current
2018-10-29 gmungocJAL-3144 SequenceFetcher without JDatabaseTree blob | commitdiff | diff to current
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... blob | commitdiff | diff to current
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... blob | commitdiff | diff to current
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup to create & propag... blob | commitdiff | diff to current
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... blob | commitdiff | diff to current
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... blob | commitdiff | diff to current
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... blob | commitdiff | diff to current
2018-09-18 gmungocJAL-3063 New View via JAXB blob | commitdiff | diff to current
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje... blob | commitdiff | diff to current
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... blob | commitdiff | diff to current
2018-09-11 gmungocJAL-3048 recoded edit View Name dialog for JalviewJS blob | commitdiff | diff to current
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch blob | commitdiff | diff to current
2018-09-10 gmungocJAL-3097 adjust viewport width on hiding columns bug/JAL-3097blankExtraColumns blob | commitdiff | diff to current
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows... blob | commitdiff | diff to current
2018-08-27 hansonrJAL-3026 alignmentFrame.statusBar.setText -> .setStatus blob | commitdiff | diff to current
2018-08-24 hansonrJAL-3026 Java bug associated with File/String mods blob | commitdiff | diff to current
2018-08-17 gmungocJAL-3048 remove obsolete way of handling dialogs in... blob | commitdiff | diff to current
2018-08-14 gmungocJAL-3032 tidy AlignmentProperties display for JalviewJS blob | commitdiff | diff to current
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon... blob | commitdiff | diff to current
2018-07-19 gmungocJAL-3048 inlined 1-line methods, small refactor of... blob | commitdiff | diff to current
2018-07-19 gmungocJAL-3048 revert saveAs action so it works in Javascript too blob | commitdiff | diff to current
2018-07-11 Jim ProcterJAL-3026 JLabel for alignment properties in jalview-js blob | commitdiff | diff to current
2018-07-11 Jim ProcterMerge branch 'Jalview-BH/JAL-3048_exportSettingsrefacto... blob | commitdiff | diff to current
2018-07-11 Jim ProcterJAL-1551 formatting blob | commitdiff | diff to current
2018-07-11 Jim ProcterJAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor blob | commitdiff | diff to current
2018-07-10 Jim ProcterMerge branch 'Jalview-BH/JAL-3026' of source.jalview... blob | commitdiff | diff to current
2018-07-10 gmungocJAL-3048 obsolete method deleted blob | commitdiff | diff to current
2018-07-10 Jim ProcterJAL-3048 switch from 'dialogdata' to DialogRunner for... blob | commitdiff | diff to current
2018-07-03 hansonrMerge remote-tracking branch 'origin/Jalview-BH/JAL... blob | commitdiff | diff to current
2018-07-02 hansonrJAL-3026 File...Reload working blob | commitdiff | diff to current
2018-07-02 hansonrJAL-3026 Java+JavaScript fix for GD#95 blob | commitdiff | diff to current
2018-07-02 Jim ProcterJAL-3048 remove TODOs Jalview-BH/JAL-3048_dialogs blob | commitdiff | diff to current
2018-07-02 Jim ProcterJAL-3048 File->VCF load refactored blob | commitdiff | diff to current
2018-07-02 Jim ProcterJAL-3048 AlignFrame -> Save dialog refactored - patched... blob | commitdiff | diff to current
2018-06-29 Jim ProcterJAL-3048 use FileParse to transfer File to NewickFile... blob | commitdiff | diff to current
2018-06-29 Jim ProcterJAL-3048 AlignFrame->File->Load Tree adapted for js blob | commitdiff | diff to current
2018-06-28 Jim ProcterJAL-3048 TODOs for refactoring JalviewFileChooser pattern blob | commitdiff | diff to current
2018-06-28 Jim ProcterJAL-3048 todo and JAL-3026 disable VCF support blob | commitdiff | diff to current
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... blob | commitdiff | diff to current
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