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[jalview.git] / src / jalview / gui / AlignFrame.java

2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff
2011-10-07	jprocter	merge Jan and Lauren's RNA GUI changes into develop...	blob \| commitdiff \| diff to current
2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-574 added option to enable/disable 'follow selectio...	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-940 - removed legacy service options from preferenc...	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-468 JAL-936 sort alignment by tree and autosort...	blob \| commitdiff \| diff to current
2011-09-15	jprocter	JAL-854 tweaked menu layout so services appear before...	blob \| commitdiff \| diff to current
2011-08-17	jprocter	JAL-853 use service action attribute to index services...	blob \| commitdiff \| diff to current
2011-07-29	janengelhardt	JAL-885; Implementation of StructureFrequency.java...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	JAL-842; toy example to insert nucleotides in sequences...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	JAL-841; Structure trigger token in jalview.io.Alignmen...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	Start merging of Laurens Code	blob \| commitdiff \| diff to current
2011-07-21	jprocter	retrieve all sequences matching a particular name ...	blob \| commitdiff \| diff to current
2011-07-09	jprocter	refactored from PopupMenu (for JAL-860)	blob \| commitdiff \| diff to current
2011-02-18	jprocter	JAL-779 and some redraw refinements	blob \| commitdiff \| diff to current
2011-01-21	jprocter	relaxed ID matching parameter JAL-753 and sortBy JAL-754	blob \| commitdiff \| diff to current
2011-01-12	jprocter	selection should be sent after refresh happens	blob \| commitdiff \| diff to current
2011-01-07	jprocter	bulk associate pdb files dropped on to alignment :...	blob \| commitdiff \| diff to current
2010-12-17	jprocter	first publicly accessible test of JAL-724	blob \| commitdiff \| diff to current
2010-12-14	jprocter	refactored and patched for JAL-721	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-09-19	jprocter	name change for jaba	blob \| commitdiff \| diff to current
2010-09-19	jprocter	thread off sequence fetcher initialisation to make...	blob \| commitdiff \| diff to current
2010-09-10	jprocter	threaded off ws menu building to avoid initial pause...	blob \| commitdiff \| diff to current
2010-08-18	jprocter	JAL-612 - catch hidden OOM related to filling in cut...	blob \| commitdiff \| diff to current
2010-08-18	jprocter	1.5 annotation fix and thread safe menu update	blob \| commitdiff \| diff to current
2010-06-21	jprocter	ensure service menu is rebuilt after update listeners...	blob \| commitdiff \| diff to current
2010-06-19	jprocter	rejigged change support to make it (more) reliable	blob \| commitdiff \| diff to current
2010-06-11	jprocter	patched for JAL-531 - only display full symbol distribu...	blob \| commitdiff \| diff to current
2010-06-08	jprocter	trim hidden regions outside selection when copying...	blob \| commitdiff \| diff to current
2010-06-06	jprocter	patch for JAL-542	blob \| commitdiff \| diff to current
2010-05-21	jprocter	more robust discovery and preset support	blob \| commitdiff \| diff to current
2010-05-17	jprocter	more robust jws2 service discovery	blob \| commitdiff \| diff to current
2010-05-14	jprocter	First patch for * JAL-493	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-29	jprocter	isAligned assertion (bug 0008144)	blob \| commitdiff \| diff to current
2010-04-29	jprocter	hide/show selected region menu entries and key bindings	blob \| commitdiff \| diff to current
2010-04-22	jprocter	feature settings is updated if new features are added...	blob \| commitdiff \| diff to current
2010-04-14	jprocter	profile visualizations are now logos	blob \| commitdiff \| diff to current
2010-04-01	jprocter	refactored copy of groupURL mechanism into new Envision...	blob \| commitdiff \| diff to current
2010-03-30	jprocter	group autoannotation and consensus display settings	blob \| commitdiff \| diff to current
2010-03-26	jprocter	enable feature display when feature settings is opened.	blob \| commitdiff \| diff to current
2010-02-10	jprocter	progress bar hashtable entry was not being removed...	blob \| commitdiff \| diff to current
2010-02-09	jprocter	todo	blob \| commitdiff \| diff to current
2009-10-14	jprocter	quick fix for nullpointer in column selection when...	blob \| commitdiff \| diff to current
2009-08-21	jprocter	prototype make groups from selection function and shift...	blob \| commitdiff \| diff to current
2009-07-24	jprocter	headless warning messages, prototype group annotation...	blob \| commitdiff \| diff to current
2009-06-19	jprocter	drag'n'drop a URL on to an alignment	blob \| commitdiff \| diff to current
2009-06-09	jprocter	fix null pointer when new view is created then closed...	blob \| commitdiff \| diff to current
2009-06-08	jprocter	ensure listeners are deregistered when panel is closed...	blob \| commitdiff \| diff to current
2009-06-01	jprocter	more graduated feature support	blob \| commitdiff \| diff to current
2009-02-06	jprocter	showUnconserved view and group setting	blob \| commitdiff \| diff to current
2009-01-07	jprocter	added higher level method to enable the display of...	blob \| commitdiff \| diff to current
2008-12-19	jprocter	new sort by length method, justify edit menu entries...	blob \| commitdiff \| diff to current
2008-12-15	jprocter	new callback handler allowing threads that request...	blob \| commitdiff \| diff to current
2008-12-04	jprocter	fetch database references for all EBI db + selected...	blob \| commitdiff \| diff to current
2008-11-12	jprocter	selection sending and receiving, autoscrolling to highl...	blob \| commitdiff \| diff to current
2008-09-08	jprocter	view settings in view submenu and user preferences...	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-08-26	jprocter	new thread for initting of DBRefFetcher with latest...	blob \| commitdiff \| diff to current
2008-08-26	jprocter	tooltip for fetch db refs and more generic regex for...	blob \| commitdiff \| diff to current
2008-08-15	jprocter	check for crossreferences every time the menus are...	blob \| commitdiff \| diff to current
2008-08-01	jprocter	new SequenceFetcher gui and visual delay indication...	blob \| commitdiff \| diff to current
2008-07-18	jprocter	Sequence label colour stored for each sequence group	blob \| commitdiff \| diff to current
2008-04-29	jprocter	added SeqSearch service interface. Documented and refac...	blob \| commitdiff \| diff to current
2008-04-21	jprocter	added centre annotation labels menu entry (and commente...	blob \| commitdiff \| diff to current
2008-04-17	jprocter	todo for refactoring webservice GUI creation mechanism	blob \| commitdiff \| diff to current
2008-02-22	jprocter	On 'save' menu entry check to see if fileformat is...	blob \| commitdiff \| diff to current
2008-01-29	jprocter	javadoc	blob \| commitdiff \| diff to current
2008-01-21	jprocter	javadoc	blob \| commitdiff \| diff to current
2007-12-21	jprocter	sequence db fetcher metadata for multiple sequence...	blob \| commitdiff \| diff to current
2007-11-16	jprocter	todo for sortbyPID operating on current selection rathe...	blob \| commitdiff \| diff to current
2007-11-12	jprocter	public method to indicate if there are progress bars...	blob \| commitdiff \| diff to current
2007-10-31	jprocter	rejiggered loadDataFile and parseFeatureFile so JNet...	blob \| commitdiff \| diff to current
2007-10-31	jprocter	javadoc on webservice discovery method	blob \| commitdiff \| diff to current
2007-10-24	jprocter	thread for product retrieval	blob \| commitdiff \| diff to current
2007-10-04	jprocter	refactored list of file extensions and file format...	blob \| commitdiff \| diff to current
2007-10-02	jprocter	added colSel as a parameter formatAdaptor print functio...	blob \| commitdiff \| diff to current
2007-08-22	jprocter	popup for non-fatal tree parsing error	blob \| commitdiff \| diff to current
2007-08-02	jprocter	javadoc and bugfix for 'save' when jalview is default...	blob \| commitdiff \| diff to current
2007-08-01	jprocter	ensure current dataset reference is passed to the cross...	blob \| commitdiff \| diff to current
2007-07-25	jprocter	bugfix for vamsas demo and IO rearrangement for AMSAFil...	blob \| commitdiff \| diff to current
2007-07-13	jprocter	pickmanager on sequence and alignment position, vamsas...	blob \| commitdiff \| diff to current
2007-05-10	jprocter	documentation	blob \| commitdiff \| diff to current
2007-05-10	amwaterhouse	Dont duplicate annotations in multiple views	blob \| commitdiff \| diff to current
2007-05-08	amwaterhouse	check for null annotations	blob \| commitdiff \| diff to current
2007-05-02	jprocter	undo stackempty error fix, refactored do and undo(...	blob \| commitdiff \| diff to current
2007-05-01	jprocter	sort-by-score works of sequence-annotation, not alignme...	blob \| commitdiff \| diff to current
2007-04-30	jprocter	rebuild sort by scores menu when new annotation is...	blob \| commitdiff \| diff to current
2007-04-27	amwaterhouse	Put alignmentProperties in scrollpane	blob \| commitdiff \| diff to current
2007-04-27	jprocter	newlines in alignment properties converted to <br>	blob \| commitdiff \| diff to current
2007-04-26	jprocter	added/tested sort by scores menu and added basic extrac...	blob \| commitdiff \| diff to current
2007-04-25	jprocter	getContentPane().add alignmentProperties popup.	blob \| commitdiff \| diff to current
2007-04-25	amwaterhouse	View Properties	blob \| commitdiff \| diff to current
2007-04-23	jprocter	functions that operate on references to sequences in...	blob \| commitdiff \| diff to current
2007-04-23	amwaterhouse	Dbref fetcher takes sequences, not alignment	blob \| commitdiff \| diff to current
2007-04-20	jprocter	global dbref fetch option in web services menu.	blob \| commitdiff \| diff to current
2007-04-19	jprocter	fixed column selection cut/paste and self paste.	blob \| commitdiff \| diff to current
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