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JAL-244 knock on - make sure alignPanel is laid out properly after adjusting height...
[jalview.git] / src / jalview / gui /
2023-10-31 James ProcterJAL-244 knock on - make sure alignPanel is laid out... tree | commitdiff
2023-10-25 Ben SoaresMerge branch 'develop' into bug/JAL-4289_group_boundary... bug/JAL-4289_group_boundary_not_drawn_properly_in_fastpaint_or_paint tree | commitdiff
2023-10-22 James ProcterJAL-1551 errant tab and import tree | commitdiff
2023-10-22 James ProcterMerge branch 'patch/JAL-4298_synchronize_consoledoc... tree | commitdiff
2023-10-21 James ProcterJAL-1332 JAL-4298 JAL-3772 rejig the quit handler so... jims/bug/JAL-4298_java_console_causing_hang_at_startup tree | commitdiff
2023-10-20 James ProcterMerge branch 'improvement/JAL-3783_upgrade_to_groovy... tree | commitdiff
2023-10-20 Ben SoaresJAL-4298 Remove a stray return in the processGroovyScri... tree | commitdiff
2023-10-20 James ProcterJAL-4298 reuse existing log level preference method tree | commitdiff
2023-10-20 Ben SoaresJAL-4298 another implicated line bug/JAL-4298_java_console_causing_hang_at_startup tree | commitdiff
2023-10-20 James ProcterJAL-4298 try much harder to avoid modifying console... patch/JAL-4298_synchronize_consoledoc tree | commitdiff
2023-10-19 Ben SoaresMerge branch 'patch/JAL-4298_synchronize_consoledoc... tree | commitdiff
2023-10-19 Ben SoaresJAL-4298 comment markers tree | commitdiff
2023-10-19 Ben SoaresMerge branch 'improvement/JAL-3783_upgrade_to_groovy... tree | commitdiff
2023-10-19 James ProcterJAL-4298 avoid deadlock waiting to update doc when... tree | commitdiff
2023-10-19 Ben SoaresJAL-4305 Isolate and unify the Jalview object from... tree | commitdiff
2023-10-18 Ben SoaresJAL-4262 Fix the nonblockingdialog so that Jalview... tree | commitdiff
2023-10-17 James ProcterJAL-4134 JAL-4302 remove unnecessary casts tree | commitdiff
2023-10-13 Ben SoaresJAL-3783 Updated groovy jars. Requires javaparser... tree | commitdiff
2023-10-12 Ben SoaresJAL-629 null check and neatening code tree | commitdiff
2023-10-11 Ben SoaresJAL-629 correct a timeout. Correct passing html flag. tree | commitdiff
2023-10-11 Ben SoaresJAL-629 Add a timeout to modal dialogs for command... tree | commitdiff
2023-10-11 Ben SoaresJAL-4298 Added diagnostics and minor dimension changes... tree | commitdiff
2023-10-05 Ben SoaresJAL-4298 Fixed initial log level to see .jalview_proper... tree | commitdiff
2023-10-03 Ben SoaresJAL-4001 Only use acquireDialogQueue and releaseDialogQ... bug/JAL-4001_fix_About_Jalview_not_appearing tree | commitdiff
2023-10-03 Ben SoaresMerge branch 'develop' into bug/JAL-4289_group_boundary... tree | commitdiff
2023-10-02 Ben SoaresJAL-4289 In fastPaint(), don't render one more than... tree | commitdiff
2023-10-01 James ProcterJAL-244 ensure background is completely filled with... tree | commitdiff
2023-10-01 James ProcterJAL-244 export image with full width IDs regardless... tree | commitdiff
2023-10-01 James ProcterJAL-244 JAL-4091 allow calculation of label id width... tree | commitdiff
2023-10-01 James ProcterJAL-244 JAL-4091 FIXME for JAL-3362 patch testCalculate... tree | commitdiff
2023-09-29 James ProcterJAL-244 JAL-4090 use current IdWidth when exporting... tree | commitdiff
2023-09-29 James ProcterJAL-3858 fix check annotation row and column positionin... tree | commitdiff
2023-09-28 James ProcterJAL-3858 check annotation row and column positioning... tree | commitdiff
2023-09-28 James ProcterJAL-3858 improved contactInterval computation and added... tree | commitdiff
2023-09-25 James ProcterJAL-3858 report PAE range with sensible precision tree | commitdiff
2023-09-19 Ben SoaresJAL-4265 Change to use JmolCommands tree | commitdiff
2023-09-16 Ben SoaresJAL-4265 Added --bgcolour for --structureimage output... tree | commitdiff
2023-09-13 Ben SoaresJAL-4274 Use Cache BITMAP_* if no other image restricti... tree | commitdiff
2023-09-12 Ben SoaresJAL-4262 Allow HTML in the dialog box for link to CLI... tree | commitdiff
2023-09-12 Ben SoaresJAL-4285 Better checkFiles processing. Better dialog. tree | commitdiff
2023-09-12 Ben SoaresJAL-4285 JAL-4262 Added a scrollable dialog to display... tree | commitdiff
2023-09-11 Ben SoaresMerge branch 'improvement/JAL-4262_deprecation_warning_... tree | commitdiff
2023-09-11 Ben SoaresJAL-4277 --mkdirs with cautious refusal for paths with .. tree | commitdiff
2023-09-08 Ben SoaresJAL-4262 Dialog for GUI and WARN for CLI of old style... tree | commitdiff
2023-09-07 James ProcterJAL-4090 JAL-4160 JAL-4274 image export dimensions... tree | commitdiff
2023-09-07 James ProcterJAL-4273 release notes for visible adjuster marks,... tree | commitdiff
2023-09-06 James ProcterJAL-4260 attempt to rejig paging when id width is adjus... tree | commitdiff
2023-09-06 James ProcterJAL-4258 remove unnecessary ‘this’ tree | commitdiff
2023-09-06 James ProcterJAL-4259 construct a new SequenceRenderer when renderin... tree | commitdiff
2023-09-06 James ProcterJAL-629 reinstate INFO level stack trace from Structure... tree | commitdiff
2023-09-05 James ProcterJAL-629 remove structure viewer from the list of struct... tree | commitdiff
2023-09-05 James ProcterJAL-629 use JalviewStructureDisplayI in place of Struct... tree | commitdiff
2023-09-01 Ben SoaresMerge branch 'feature/JAL-629_--output_-_means_output_t... tree | commitdiff
2023-09-01 Ben SoaresJAL-629 Save structure frames in project files when... tree | commitdiff
2023-09-01 Ben SoaresMerge branch 'feature/JAL-629_--output_-_means_output_t... tree | commitdiff
2023-09-01 Ben SoaresJAL-629 Fix --structureimage and options tree | commitdiff
2023-08-31 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-08-28 Ben SoaresMerge branch 'develop' into merge/big_merge_of_bens_stu... tree | commitdiff
2023-08-28 James ProcterJAL-4253 drop the bottom line so it lines up with the... tree | commitdiff
2023-08-24 Ben SoaresMerge branch 'develop' into merge/big_merge_of_bens_stu... tree | commitdiff
2023-08-24 Ben SoaresMerge branch 'features/r2_11_2_alphafold/JAL-629' into... tree | commitdiff
2023-08-24 Ben SoaresJAL-629 Avoid hidden options dialog when saving in... tree | commitdiff
2023-08-24 Ben SoaresMerge branch 'bug/JAL-4214_system_freeze_when_opening_f... tree | commitdiff
2023-08-23 Ben SoaresMerge branch 'improvement/JAL-4250_secondary_structure_... tree | commitdiff
2023-08-23 Ben SoaresJAL-4250 Simplification of polygons and adjustments... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-4206_improve_JalviewFileC... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'bug/JAL-4214_system_freeze_when_opening_f... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'feature/JAL-244_Automatically_adjust_left... tree | commitdiff
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-3830_remove_dock_icon_in_... tree | commitdiff
2023-08-18 Ben SoaresJAL-4242 null check on getValue() return bug/JAL-4242_exception_when_pressing_escape_in_fetch_from_URL_dialog tree | commitdiff
2023-08-11 Ben SoaresJAL-629 Much better way of dealing with list of filenam... tree | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... tree | commitdiff
2023-08-09 Ben SoaresJAL-629 Enable output to STDOUT when specifying output... tree | commitdiff
2023-08-09 Ben SoaresJAL-244 Fix window size narrow adjustment not becoming... feature/JAL-244_Automatically_adjust_left_margin_to_avoid_cropping_annotation_labels tree | commitdiff
2023-08-08 Ben SoaresJAL-244 Added light grey marks to indicate regions... tree | commitdiff
2023-08-08 Ben SoaresJAL-244 Fix mismatched vertical positioning of sequence... tree | commitdiff
2023-08-07 Ben SoaresJAL-244 Avoid working on the Ids Graphics object when... tree | commitdiff
2023-08-04 Ben SoaresJAL-244 Adjust wrapped alignment widths to always maint... tree | commitdiff
2023-08-02 Ben SoaresJAL-244 Fix buglet with automatic change in id column... tree | commitdiff
2023-08-01 Ben SoaresJAL-244 More control of automatic idWidth adjustments... tree | commitdiff
2023-07-27 Ben SoaresMerge branch 'develop' into feature/JAL-244_Automatical... tree | commitdiff
2023-07-27 Ben SoaresJAL-244 Allow wrap manual adjustments to be smaller... tree | commitdiff
2023-07-27 Ben SoaresJAL-244 Allow adjusting Id column width in wrap mode... tree | commitdiff
2023-07-25 Ben SoaresJAL-244 testing without AlignFrame for --wrap tree | commitdiff
2023-07-21 Ben SoaresJAL-244 Fixed idWidth labels in headless mode for non... tree | commitdiff
2023-07-20 Ben SoaresJAL-244 More accurate width calculation, allow increase... tree | commitdiff
2023-07-20 James ProcterJAL-3855 tree title for PAE matrix tree is PAE Matrix... patch/JAL-3855_fixup_pae tree | commitdiff
2023-07-20 James ProcterJAL-3855 auto select clusters and fix up colouring... tree | commitdiff
2023-07-19 Ben SoaresJAL-244 Changes to Annotation labels width now adjusts... tree | commitdiff
2023-07-18 James ProcterJAL-3858 fix off-by-one in matrix visualisation and... tree | commitdiff
2023-07-18 James ProcterJAL-3858 flip diagonal so matrix visualisation is top... tree | commitdiff
2023-07-06 James ProcterJAL-629 make —structure image work again after threadin... tree | commitdiff
2023-07-06 James ProcterJAL-4217 catch case when the structure viewer doesn... tree | commitdiff
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp... tree | commitdiff
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp... tree | commitdiff
2023-07-05 James ProcterMerge branch 'patch/JAL-4213_addref_with_selection... tree | commitdiff
2023-06-30 James ProcterJAL-4217 try really hard to shut down and dispose of... tree | commitdiff
2023-06-29 Ben SoaresJAL-4214 Linux only: Disable menus when internal modal... bug/JAL-4214_system_freeze_when_opening_file_using_gui_in_linux tree | commitdiff
2023-06-28 Ben SoaresJAL-4214 Make modal internal frame disappear when main... tree | commitdiff
2023-06-28 Ben SoaresJAL-4214 Close modal internal frame if JRootPane activi... tree | commitdiff
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