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JAL-2629 add simple jackhmmer functionality
[jalview.git] / src / jalview / hmmer / HMMERParamStore.java
2019-07-02 tvaJAL-2629 add simple jackhmmer functionality blob | commitdiff
2018-05-30 gmungocJAL-3005 JAL-2629 file chooser argument for HMM search... blob | commitdiff | diff to current
2018-05-14 gmungocJAL-2711 show short file names in search database combo box blob | commitdiff | diff to current
2018-05-10 gmungocJAL-2629 revert to showing Profile parameter even if... blob | commitdiff | diff to current
2018-05-10 gmungocJAL-2629 adjust placement and optionality of arguments... blob | commitdiff | diff to current
2018-05-09 gmungocJAL-2714 HMMSearch cutoff by E-Value, Score or None blob | commitdiff | diff to current
2018-04-20 gmungocJAL-591 slider scale factor now derived from min-max... blob | commitdiff | diff to current
2018-04-17 gmungocJAL-2629 choice of hmm profile now a parameter not... blob | commitdiff | diff to current
2018-04-16 gmungocJAL-2937 use preferences for presets, simplify some... blob | commitdiff | diff to current
2018-03-30 gmungocJAL-2629 tidy code, factory methods for param sets blob | commitdiff | diff to current
2018-02-21 gmungocJAL-2629 simplifying method signatures in Hmmer command... blob | commitdiff | diff to current
2018-02-19 gmungocJAL-2629 partial refactoring of Hmmer command classes blob | commitdiff | diff to current
2018-02-19 gmungocJAL-2629 formatting only blob | commitdiff | diff to current
2017-08-25 TZVanaaltenJAL-2629 add multiple options for running hmmbuild... blob | commitdiff | diff to current
2017-08-25 TZVanaaltenJAL-2629 add adjustable parameters to hmmbuild blob | commitdiff | diff to current
2017-08-25 TZVanaaltenJAL-2629 adjust log parameter slightly and reduce granu... blob | commitdiff | diff to current
2017-08-25 TZVanaaltenJAL-2629 adjust parameter min and max to better suit... blob | commitdiff | diff to current
2017-08-25 TZVanaaltenJAL-2629 hmmsearch now works for different databases blob | commitdiff | diff to current
2017-08-25 TZVanaaltenJAL-2629 add ability to add and select a DB for hmmsearch blob | commitdiff | diff to current
2017-08-25 TZVanaaltenJAL-2629 add basic parameter adjustment to hmmsearch... blob | commitdiff | diff to current