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Merge branch 'develop' into update_212_Dec_merge_with_21125_chamges
[jalview.git] / src / jalview / hmmer / HmmerCommand.java
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2... blob | commitdiff
2021-10-06 Mateusz WarownyJAL-3899 Update usages of uniquify and deuniquify. blob | commitdiff | diff to current
2020-05-18 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into... blob | commitdiff | diff to current
2019-07-12 ThomasJAL-2629 can now choose number of jackhmmer iterations merge/JAL-3285_mchmmer_with_211_develop blob | commitdiff | diff to current
2019-07-12 ThomasJAL-2629 hmmer searches now read domain rather than... blob | commitdiff | diff to current
2019-07-11 ThomasJAL-2629 hmm search UI and structural improvements... blob | commitdiff | diff to current
2019-07-10 tvaJAL-2629 fix hmmsearch/jackhmmer being unable to search... blob | commitdiff | diff to current
2019-07-05 tvaJAL-2629 uniquify all hmmer command sequence outputs blob | commitdiff | diff to current
2019-07-05 tvaJAL-2629 fix file format issues preventing hmmsearch... blob | commitdiff | diff to current
2019-07-03 tvaJAL-2629 can now filter by sequence e-value or bit... blob | commitdiff | diff to current
2019-07-02 tvaJAL-2629 add simple jackhmmer functionality blob | commitdiff | diff to current
2019-06-06 tvaJAL-3285 fix incorrect file paths on HMMAlign/Search... blob | commitdiff | diff to current
2019-06-06 tvaJAL-3285 add Cygwin environment path fix for Windows blob | commitdiff | diff to current
2018-06-06 gmungocJAL-3013 resolve symlink to hmmer binaries folder features/mchmmer blob | commitdiff | diff to current
2018-04-17 gmungocMerge branch 'features/mchmmer' of https://source.jalvi... blob | commitdiff | diff to current
2018-04-17 gmungocJAL-2629 choice of hmm profile now a parameter not... blob | commitdiff | diff to current
2018-04-17 Mungo CarstairsJAL-2937 working Cygwin bash execution of hmmbuild... blob | commitdiff | diff to current
2018-04-09 Mungo CarstairsJAL-2937 Cygwin path preference, method refactoring blob | commitdiff | diff to current
2018-03-30 gmungocJAL-2629 Javadoc updates blob | commitdiff | diff to current
2018-03-23 gmungocJAL-2629 pad gaps when exporting alignment as 'database... blob | commitdiff | diff to current
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM... blob | commitdiff | diff to current
2018-02-21 gmungocJAL-2629 simplifying method signatures in Hmmer command... blob | commitdiff | diff to current
2018-02-20 gmungocJAL-2629 removed SequenceI.get/setLastPosition and... blob | commitdiff | diff to current
2018-02-19 gmungocJAL-2629 partial refactoring of Hmmer command classes blob | commitdiff | diff to current