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JAL-3855 JAL-3829 don’t need to make up alphafold model retrieval URL when we’ve...
[jalview.git] / src / jalview / util /
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-17 gmungocJAL-1260 refactored GenBank (and EMBL) flat file parser tree | commitdiff
2021-09-16 Jim ProcterJAL-3794 X and N are counted as DNA characters, but... tree | commitdiff
2021-09-16 gmungocJAL-3761 more consistent parameter naming tree | commitdiff
2021-09-16 gmungocJAL-3761 helper method reinstated to avoid code duplication tree | commitdiff
2021-09-16 gmungocJAL-3761 locateInFrom/To revised with tests; unused... tree | commitdiff
2021-09-16 gmungocJAL-3761 debugged and working (but not tidied) locateIn... tree | commitdiff
2021-09-16 gmungocJAL-3761 locateInFrom2 work in progress commit tree | commitdiff
2021-09-15 gmungocJAL-3761 failing test, formatting, method renamed tree | commitdiff
2021-09-15 gmungocJAL-3751 only merge strictly contiguous ranges of mappings tree | commitdiff
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 tree | commitdiff
2021-09-15 Jim ProcterMerge branch 'Jalview-JS/bug/JAL-3762_URLparamsOverride... tree | commitdiff
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 tree | commitdiff
2021-09-12 Jim ProcterJAL-3829 JalviewJS workarounds/patches tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 convenience method to check a URL will return... tree | commitdiff
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences... tree | commitdiff
2021-02-17 Jim ProcterMerge branch 'feature/JAL-3692enaEndpoint' into patch... tree | commitdiff
2020-12-11 Ben SoaresJAL-3594 Adjustments to allow JalviewJS to use ChannelP... tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 Images for splash screen tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... tree | commitdiff
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... tree | commitdiff
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... tree | commitdiff
2020-12-05 Ben SoaresJAL-3594 Default values for channel properties defined... tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls tree | commitdiff
2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 check for !args || args=="" before overwriting Jalview-JS/bug/JAL-3762_URLparamsOverrideInfoArg tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 more typo fixing :q tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 syntax error typo tree | commitdiff
2020-10-02 Jim ProcterJAL-3762 check if Info.args already defined before... tree | commitdiff
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests... tree | commitdiff
2020-07-21 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS... tree | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop tree | commitdiff
2020-05-18 gmungocJAL-3613 remove debug code committed in error tree | commitdiff
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search... tree | commitdiff
2020-04-30 Ben SoaresJAL-3608 Enforcing MetalLookAndFeel as default on linux... tree | commitdiff
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files tree | commitdiff
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati... tree | commitdiff
2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into... tree | commitdiff
2020-04-13 gmungocJAL-3574 Matcher with integer/long value pattern (e... tree | commitdiff
2020-04-07 BobHansonJAL-3589 (old Platform) fix for Jalvew-JS/develop only. tree | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-03-09 gmungocJAL-3528 unit tests added for failed lookup, Javadoc tree | commitdiff
2020-02-14 Jim Procterfix for JAL-3529 tree | commitdiff
2020-02-14 Jim ProcterJAL-1354 JAL-3528 fix bug from b594d516dac69eebcccdc743... tree | commitdiff
2020-02-12 Jim ProcterJAL-1354 JAL-3528 report missing keys for MessageManage... tree | commitdiff
2020-01-28 gmungocMerge branch 'feature/JAL-3121gffAttributeMap' into... tree | commitdiff
2019-11-19 gmungocJAL-3210 use JSUtil methods getFileBytes, getApplet tree | commitdiff
2019-11-12 gmungocJAL-3274 resource path correction, code tidying (consta... tree | commitdiff
2019-11-05 gmungocJAL-3120 JAL-3130 can't read "java.specification.versio... tree | commitdiff
2019-11-05 gmungocJAL-3210 JAL-3263 redo 'Mandarin' character for JS... tree | commitdiff
2019-11-01 Ben SoaresJAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files tree | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... tree | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge tree | commitdiff
2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-06-18 Ben SoaresJAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations... tree | commitdiff
2019-06-12 Ben SoaresJAL-3295 Fixed CMD-select of sequences in alignment... tree | commitdiff
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript tree | commitdiff
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows tree | commitdiff
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing... tree | commitdiff
2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadabil... tree | commitdiff
2019-04-16 hansonrcaching of DnD files dropped tree | commitdiff
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... tree | commitdiff
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves... tree | commitdiff
2019-04-09 hansonrbetter comment regarding setting recognized ajax-enable... tree | commitdiff
2019-04-05 hansonrFile caching activated explicitly in Platform tree | commitdiff
2019-04-05 hansonrcommand line fix tree | commitdiff
2019-04-05 hansonrfixes for Jalview command-line URI code tree | commitdiff
2019-04-04 gmungocJAL-3220 j2sIgnore on 3 more main methods tree | commitdiff
2019-04-04 gmungocJAL-3220 j2sIgnore on main methods on test / utility... tree | commitdiff
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... tree | commitdiff
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of... tree | commitdiff
2019-04-02 hansonr#210 Fixes Ensembl fetch problem (really) tree | commitdiff
2019-04-01 hansonrJSON refactoring of a few methods; fixing JavaScript... tree | commitdiff
2019-03-31 hansonrCache JS adds search of Info for jalview_xxx properties tree | commitdiff
2019-03-28 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-03-28 gmungocMerge branch 'feature/JAL-3181linkOrdering' into develop tree | commitdiff
2019-03-27 hansonrconsolidation of Platform isJS calls tree | commitdiff
2019-03-27 hansonrisJS cleanup tree | commitdiff
2019-03-27 hansonrPlatform comment about isPopupTrigger Jalview-JS/developPreFrameEmbedding tree | commitdiff
2019-03-26 hansonrupgraded Platform.java tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... tree | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-03-04 gmungocMerge remote-tracking branch 'origin/tasks/JAL-3035_rem... tree | commitdiff
2019-02-04 hansonrrefactoring for DBMODList tree | commitdiff
2019-01-29 hansonrJSON writing fix, JColorChooser (mnemonic change) fix tree | commitdiff
2019-01-29 hansonrmore iterators out; some time checks tree | commitdiff
2019-01-26 hansonrremoving cyclic call tree | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... tree | commitdiff
2019-01-25 hansonrtiming code tree | commitdiff
2019-01-25 hansonrJSON refactoring tree | commitdiff
2019-01-21 hansonradded Platform settings separating mouse use of win... tree | commitdiff
2019-01-21 hansonradded Platform settings separating mouse use of win... tree | commitdiff
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... tree | commitdiff
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... tree | commitdiff
2019-01-21 hansonrcomments only tree | commitdiff
2019-01-04 gmungocJAL-3181 simplified code and test tree | commitdiff
2019-01-03 gmungocJAL-3181 order link menu items tree | commitdiff
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