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modified regex for sequence validation
[jalview.git] / src /
2014-11-27 Charles Ofoegbumodified regex for sequence validation tree | commitdiff
2014-11-19 Charles OfoegbuJAL-1583 MSA webservice validation tree | commitdiff
2014-11-19 Charles Ofoegbumerge commit tree | commitdiff
2014-11-19 Charles OfoegbuJAL-1522 included installation details in log output tree | commitdiff
2014-11-18 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into... tree | commitdiff
2014-11-18 Charles OfoegbuJAL-998 tooltip wrapping tree | commitdiff
2014-11-18 gmungocJAL-1349 rebuild Web Service menu after add/delete... tree | commitdiff
2014-11-18 gmungocJAL-1582 removing finalize() as may have unexpected... tree | commitdiff
2014-11-18 Charles OfoegbuJAL-1583 MSA webservice client side validation tree | commitdiff
2014-11-18 gmungocJAL-1582 quicker tooltip on service presets (and code... tree | commitdiff
2014-11-18 gmungocJAL-1349 refresh menu presets after 'create' new tree | commitdiff
2014-11-18 gmungocJAL-1580 Chimera path tooltip, removed focusListener tree | commitdiff
2014-11-18 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-18 Jim ProcterMerge branch 'JAL-1587_promotedisorder' into Release_2_... tree | commitdiff
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct... tree | commitdiff
2014-11-17 Charles OfoegbuUndo changes to JabaWsServerQuery.java tree | commitdiff
2014-11-17 Charles OfoegbuUndo changes to JabaWsServerQuery.java tree | commitdiff
2014-11-17 gmungocJAL-1581 Tooltip slimmed down, Help button added on... tree | commitdiff
2014-11-17 Jim ProcterJAL-1587 distinct calc IDs for JPredMSA and Jpred singl... tree | commitdiff
2014-11-17 Jim ProcterJAL-1587 propagate results of JABA sequence based predi... tree | commitdiff
2014-11-17 Jim Procterimports and formatting tree | commitdiff
2014-11-17 Jim ProcterJAL-1587 propagate JPred annotation from legacy jpred... tree | commitdiff
2014-11-17 Jim Procterformatting tree | commitdiff
2014-11-17 Jim ProcterJAL-1587 JAL-407 instrument setDataset to add dataset... tree | commitdiff
2014-11-17 Charles OfoegbuJAL-1043 patch to show warning dialog when webservice... tree | commitdiff
2014-11-17 gmungocJAL-1293 hide/show sequence annotations with hide/revea... tree | commitdiff
2014-11-17 gmungocJAL-1586 chimera file chooser added, validate on OK... tree | commitdiff
2014-11-17 Charles OfoegbuMerge branch 'bug/JAL-1570_unable-to-add-JABAWS-Server... tree | commitdiff
2014-11-17 Charles Ofoegbuupdated documentation tree | commitdiff
2014-11-17 Jim ProcterMerge branch 'Release_2_8_2_Branch' into mrg_dev_282 tree | commitdiff
2014-11-17 Charles Ofoegbucomand line support for svg generation tree | commitdiff
2014-11-17 gmungocJAL-1580 size parameters dialog to height of Desktop tree | commitdiff
2014-11-17 Charles OfoegbuJAL-1570 patch to enable adding a webservice which... tree | commitdiff
2014-11-17 gmungocJAL-1528 Chimera Help doc + fixes to setting colours tree | commitdiff
2014-11-17 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... tree | commitdiff
2014-11-17 gmungocJAL-1528 Chimera tidy errors, focus after align, close... tree | commitdiff
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface tree | commitdiff
2014-11-17 Jim ProcterMerge commit '1d9e1c80fb6c0e32313a976ae0065fd32639f2bc... tree | commitdiff
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... tree | commitdiff
2014-11-12 Charles Ofoegbuhouse-keeping tree | commitdiff
2014-11-12 Charles OfoegbuAdded support for SVG Export tree | commitdiff
2014-11-12 Jim ProcterJAL-974 fix class contamination for jalviewLite build tree | commitdiff
2014-11-12 Jim Procterjavadoc tree | commitdiff
2014-11-12 Jim ProcterJAL-674 use the getMapping/transfer to transfer annotat... tree | commitdiff
2014-11-12 Jim ProcterJAL-674 patch broken getMapping function tree | commitdiff
2014-11-12 Jim ProcterJAL-674 switch from .transfer to .liftOver for transfer... tree | commitdiff
2014-11-12 Jim ProcterJAL-674 note about broken .transfer method (expect... tree | commitdiff
2014-11-12 Jim ProcterJAL-674 javadoc tree | commitdiff
2014-11-11 gmungocJAL-1527 opening a project saved with JMol should use... tree | commitdiff
2014-11-06 Jim ProcterMerge branch 'features/JAL-1152annotationSorting' into... tree | commitdiff
2014-11-06 gmungocJAL-1152 use a proper RadioButton not a faked one tree | commitdiff
2014-11-05 gmungocJAL-674 Prefences tweaks incl help documentation for... tree | commitdiff
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva... tree | commitdiff
2014-11-04 gmungocJAL-1152 annotation sort algorithm optimisation tree | commitdiff
2014-11-04 Jim ProcterJAL-1213 normalise sequence extracted from Jmol in... tree | commitdiff
2014-11-03 gmungocMerge branch 'features/JAL-1152annotationSorting' of... tree | commitdiff
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume... tree | commitdiff
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation... tree | commitdiff
2014-11-03 Jim ProcterMerge branch 'bug/JAL-1250_redundance-removal' into... tree | commitdiff
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation... tree | commitdiff
2014-11-03 Jim ProcterJAL-795 JAL-674 tweaked logic to avoid black annotation... tree | commitdiff
2014-11-03 Jim Procterfix for JAL-1579 create threshold object for annotation... tree | commitdiff
2014-11-03 Jim ProcterJAL-1578 JAL-674 store/restore alignment annotation... tree | commitdiff
2014-11-03 Jim ProcterJAL-1578 formatting and imports tree | commitdiff
2014-11-03 Jim ProcterJAL-1551 formatting tree | commitdiff
2014-11-03 Jim ProcterJAL-674 JAL-961 JAL-1578 accessors and copy constructor... tree | commitdiff
2014-11-03 Jim Procterjavadoc tree | commitdiff
2014-10-31 gmungocJAL-1152 bug fix for 'no sort' case + tests for autocal... tree | commitdiff
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc... tree | commitdiff
2014-10-31 Jim ProcterJAL-674 JAL-961 pass row reference to handler to check... tree | commitdiff
2014-10-31 Jim ProcterJAL-674 JAL-961 properties to stash additional informat... tree | commitdiff
2014-10-30 Jim ProcterMerge branch 'develop' into features/ssFromPDBEntry tree | commitdiff
2014-10-30 Jim ProcterJAL-674 hang on to sequences created by secondary parsi... tree | commitdiff
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 propagate annotation onto mapped sequence and... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 use PDB ID<>File registry to look up correct... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 return original and replacement sequences and... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 helpful javadoc for remap method tree | commitdiff
2014-10-30 Jim ProcterJAL-674 flag and proxy method to distinguish setMapping... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 map on StructureSelectionManager to record... tree | commitdiff
2014-10-30 Jim Procterpatch for JAL-795 - use base secondary structure colour... tree | commitdiff
2014-10-30 Jim ProcterJAL-1551 format and tidy tree | commitdiff
2014-10-30 gmungocJAL-1152 prototype of new Annotations menu with sort... tree | commitdiff
2014-10-30 Charles OfoegbuJAL-353 updated patch for undo successive remove redund... tree | commitdiff
2014-10-29 Charles OfoegbuJAL-353 updated patch for undo successive remove redund... tree | commitdiff
2014-10-29 Jim ProcterJAL-1264 JAL-674 method to copy annotation on structure... tree | commitdiff
2014-10-29 Jim ProcterJAL-674 JAL-1264 remap method to allow annotation posit... tree | commitdiff
2014-10-28 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2014-10-28 gmungocJAL-1264 refactor to add menu options to _both_ sequenc... tree | commitdiff
2014-10-28 Charles Ofoegbu2_8_2_Branch merge tree | commitdiff
2014-10-28 Charles OfoegbuJAL-353 undo for successive removal of redundant sequen... tree | commitdiff
2014-10-28 Charles OfoegbuJAL-1250 Redundancy removal bug fix for Applet version tree | commitdiff
2014-10-27 Jim ProcterMerge branch 'Release_2_8_2_Branch' into merge_r282_dev tree | commitdiff
2014-10-27 Charles OfoegbuUpdated RedundancyPanel.java to referesh the tree view... tree | commitdiff
2014-10-27 Charles OfoegbuPatch for redundancy removal tree | commitdiff
2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch tree | commitdiff
2014-10-23 unknownJAL-1521 updated xerces to 2.11 along with xml-apis tree | commitdiff
2014-10-23 Jim Procterpatch fixes JAL-1558 tree | commitdiff
2014-10-23 gmungocJAL-1264 further refactoring and tests tree | commitdiff
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