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JAL-4245 Test getRootDataset method
[jalview.git] / src /
2023-07-26 Mateusz WarownyJAL-4245 Return null from getRootDataset if no dataset tree | commitdiff
2023-07-17 Mateusz WarownyJAL-4232 Disable menu items for RNA services for proteins. patch/JAL-4232-disable-unavailable-services tree | commitdiff
2023-07-14 Mateusz WarownyMerge branch 'feature/JAL-3954-ebi-phmmer' into mmw... mmw/JAL-4199-task-execution-update tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Fix cancel button not appearing on progress bar tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Restore deletable test when removing workers tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Remove viewport reference from AnnotationTask tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Fix slivka client to parse feature fileters tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 remove viewport references from AlignmentTask tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Fix interactive jobs not being stopped tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Organise AlignCalcWorkerAdapter imports tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Implement toString in BaseTask tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Organise annotation task imports and fields tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Set initial delay of task executor to 0 tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Remove commented out code tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Perform null check for annotation sequenceRef tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Remove utility methods moved to other classes... tree | commitdiff
2023-07-12 Mateusz WarownyImplement getRootDatasetSequence for SequenceI tree | commitdiff
2023-07-12 Mateusz WarownyImplement getLastGraphGroup in for AnnotatedCollectionI tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Schedule tasks for execution from MenuManager tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Tidy up imports tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Update gui handler for annotation tasks tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Implement AlignCalcWorker adapter for annot... tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Fix method name typo tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Make all TaskEventListener methods default tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Remove taskRestarted from task events tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Allow multiple listeners in TaskEventSupport tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Change actions to be task factories tree | commitdiff
2023-07-12 Mateusz WarownyJAL-4199 Replace AbstractPollingTask with BaseTask tree | commitdiff
2023-06-22 Mateusz WarownyJAL-4199 Initialize jobs and tasks with status CREATED tree | commitdiff
2023-06-14 Mateusz WarownyJAL-4199 Test URL settings and basic service discovery tree | commitdiff
2023-06-14 Mateusz WarownyJAL-4199 Update slivka client tree | commitdiff
2023-06-02 Mateusz WarownyJAL-3954 Do not retrieve alignment for failed jobs feature/JAL-3954-ebi-phmmer tree | commitdiff
2023-06-02 Mateusz WarownyJAL-3954 Report error log when job fails tree | commitdiff
2023-06-02 Mateusz WarownyJAL-3954 Add query sequence aligned to consensus to... tree | commitdiff
2023-06-02 Mateusz WarownyJAL-3954 reuse spinner dialog to show search task status tree | commitdiff
2023-05-30 Mateusz WarownyJAL-3954 create primitive gui handler for search service tree | commitdiff
2023-05-16 Mateusz WarownyJAL-3954 Implement phmmer action and task as alignment... tree | commitdiff
2023-05-16 Mateusz WarownyJAL-3954 Log events TaskEventListener.NULL_LISTENER tree | commitdiff
2023-05-10 Mateusz WarownyJAL-3954 Create fallback for handling unknown actions tree | commitdiff
2023-05-10 Mateusz WarownyJAL-3954 Register AlignFrame as web service change... tree | commitdiff
2023-05-10 Mateusz WarownyJAL-3954 Implement job dispatcher service discoverer tree | commitdiff
2023-05-10 Mateusz WarownyJAL-3954 Implement NullAction and NullTask for testing... tree | commitdiff
2023-05-10 Mateusz WarownyJAL-3954 Fix typo in error message tree | commitdiff
2023-05-08 Mateusz WarownyJAL-3954 Implement proxy ws client for phmmer tree | commitdiff
2023-05-08 Mateusz WarownyJAL-3954 Create getters for Credentials record tree | commitdiff
2023-05-08 Mateusz WarownyJAL-3954 Add value parsers for double, int and bool... tree | commitdiff
2023-05-08 Mateusz WarownyJAL-3954 Create ParamDatastore builder for phmmer tree | commitdiff
2023-04-24 Mateusz WarownyJAL-4155 Replace unsafe casting to AlignmentPanel with... tree | commitdiff
2023-04-24 James ProcterJAL-4155 Viewport holds a reference to its AlignmentVie... tree | commitdiff
2023-03-28 Mateusz WarownyJAL-4154 Add Platform.forArch method. tree | commitdiff
2023-03-28 Mateusz WarownyMerge branch 'JAL-4152-typed-singleton-provider' into... tree | commitdiff
2023-03-28 Mateusz WarownyMerge branch 'development/Release_2_12_Branch' into... tree | commitdiff
2023-03-24 Mateusz WarownyJAL-4152 Remove redundant casts from getInstance usages. JAL-4152-typed-singleton-provider tree | commitdiff
2023-03-22 Mateusz WarownyJAL-4152 Make return type of getInstance a generic... tree | commitdiff
2023-03-15 Mateusz WarownyJAL-4146 Change occurrences of <br/> to <br> tree | commitdiff
2023-03-01 Mateusz WarownyJAL-4136 Replace uses of isBlank with isEmpty tree | commitdiff
2023-02-24 Mateusz WarownyJAL-4135 replace stream.toString(Charset) calls with... tree | commitdiff
2023-02-22 Mateusz WarownyJAL-4130 Replace Collection#forEach call with for loop tree | commitdiff
2023-02-22 Mateusz WarownyJAL-4130 Avoid using thenComparing of the Comparator... tree | commitdiff
2023-02-17 Mateusz WarownyJAL-4131 Replace usages of requireNonNullElse tree | commitdiff
2023-02-16 Mateusz WarownyJAL-4130 Workaround the j2s issue with final variables... tree | commitdiff
2023-02-06 Mateusz WarownyJAL-3878 Change Cache.log calls to Console tree | commitdiff
2023-02-06 Mateusz WarownyMerge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'develop' into development/Release_2_12_Br... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api tree | commitdiff
2023-01-20 Jim ProcterJAL-4102 update 2.12 from 2.11.2.6 patch release -... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'patch/Release_2_11_2_6_Branch' into develop tree | commitdiff
2023-01-20 Jim ProcterJAL-2353 primary ref candidates that should be promoted... patch/Release_2_11_2_6_Branch tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 patch REST client for changed JSON schema... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 formatting tree | commitdiff
2023-01-06 Jim ProcterMerge branch 'improvement/JAL-4111_suffixed_DEVELOP_cha... tree | commitdiff
2022-12-16 Jim ProcterJAL-4109 examine -Djalview.loglevel on startup to decid... tree | commitdiff
2022-12-16 Jim ProcterJAL-4107 fix merge and avoid NPE tree | commitdiff
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2... tree | commitdiff
2022-12-13 Jim ProcterMerge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl... tree | commitdiff
2022-11-30 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL tree | commitdiff
2022-11-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs... tree | commitdiff
2022-11-29 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL tree | commitdiff
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge... tree | commitdiff
2022-10-25 Ben SoaresJAL-3416 Making FlatLaF default for macs due to a probl... tree | commitdiff
2022-10-11 Jim ProcterJAL-4073 fix PEBCAK failure tree | commitdiff
2022-10-06 Jim Procterstable url for PFAM retrieval via interpro api :) JAL... tree | commitdiff
2022-10-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2022-10-06 Jim ProcterJAL-4073 Pfam retrieval now works via a template includ... tree | commitdiff
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog... tree | commitdiff
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering... tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 imports reformatting tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 patch for 2.11.2.4 release tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'improvement/JAL-4014_gecos_colour_schemes... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... tree | commitdiff
2022-08-08 Jim ProcterJAL-4034 show the loading spinner when switching betwee... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'features/JAL-4034_improve_3dbeacons_butto... tree | commitdiff
2022-07-25 Ben SoaresJAL-4036 moved a comment block tree | commitdiff
2022-07-25 Ben SoaresJAL-4034 button looks better also on other OSes with... tree | commitdiff
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