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JAL-2119 fixes for broken links in help files
[jalview.git] / src /
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... tree | commitdiff
2016-05-27 gmungocJAL-1989 added hashCode and equals, renamed field to... tree | commitdiff
2016-05-27 gmungocJAL-1911 use existing object when setting 'Prompt each... tree | commitdiff
2016-05-27 tcofoegbumerge tree | commitdiff
2016-05-27 tcofoegbuJAL-1823 improvement to all chain code specification... tree | commitdiff
2016-05-27 tcofoegbuJAL-1911 further improvement to bugfix - do not save... tree | commitdiff
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed... tree | commitdiff
2016-05-27 gmungocJAL-1911 correct typo in field name tree | commitdiff
2016-05-26 tcofoegbumerge tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 improvement to bugfix - do not save i18n text... tree | commitdiff
2016-05-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-05-26 tcofoegbumerge tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-26 Jim ProcterJAL-2121 refactor todo tree | commitdiff
2016-05-26 gmungocJAL-391 add reverse / complement to command history... tree | commitdiff
2016-05-26 gmungocJAL-2035 relocated a comment tree | commitdiff
2016-05-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-05-26 Jim ProcterJAL-1551 formatting tree | commitdiff
2016-05-26 Jim ProcterJAL-1552 refactor shared dataflavor hander tree | commitdiff
2016-05-26 gmungocJAL-1993 open sequence fetcher tree on 'fetch sequences' tree | commitdiff
2016-05-26 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-05-26 Jim ProcterJAL-1552 extra debug logging for dataflavor if drop... tree | commitdiff
2016-05-26 tcofoegbumerge tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-26 gmungocJAL-1797 non-case-sensitive counting of residues /... tree | commitdiff
2016-05-25 Jim ProcterJAL-1522 patch - try to pick best text dataflavor tree | commitdiff
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format tree | commitdiff
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests tree | commitdiff
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors tree | commitdiff
2016-05-18 tcofoegbumerge tree | commitdiff
2016-05-18 tcofoegbuJAL-1563 smarter support for advanced querying of Unipr... tree | commitdiff
2016-05-18 gmungocJAL-2049 set sequence feature group to "Jalview" for... tree | commitdiff
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue tree | commitdiff
2016-05-17 tcofoegbuJAL-2106 JAL-1926 updated source doc for set/getSourceDBRef tree | commitdiff
2016-05-17 tcofoegbumerge tree | commitdiff
2016-05-17 tcofoegbuJAL-1270 Fixed anntatedPDBFileInputTest and updated... tree | commitdiff
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... tree | commitdiff
2016-05-12 gmungocJAL-2104 format tooltips to wrap correctly tree | commitdiff
2016-05-09 tcofoegbumerge tree | commitdiff
2016-05-09 tcofoegbuJAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin... tree | commitdiff
2016-05-09 tcofoegbuJAL-2102 implemented improvement to round FTS's numberi... tree | commitdiff
2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature... tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-05-06 Jim ProcterJAL-192 fix javadoc tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 unused variables tree | commitdiff
2016-05-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 reuse refactored scale code for wrappe... tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin... tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin... tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin... tree | commitdiff
2016-05-06 Jim ProcterJAL-2100 centre triangles on hidden column vertical... tree | commitdiff
2016-05-06 Jim ProcterJAL-2100 optimisation tree | commitdiff
2016-05-06 Jim ProcterJAL-2100 triangles shown below in jvdesktop unwrapped... tree | commitdiff
2016-05-06 Jim ProcterJAL-192 patch off-by-one for pathological gap case tree | commitdiff
2016-05-05 Jim ProcterJAL-192 patch for off-by one and pathological case... tree | commitdiff
2016-05-04 gmungocJAL-2092 hide columns with/without feature tree | commitdiff
2016-05-04 gmungocMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into... tree | commitdiff
2016-05-04 tcofoegbumerge tree | commitdiff
2016-05-04 tcofoegbuJAL-1563 JAL-2091 Added total result count to Uniprot... tree | commitdiff
2016-05-04 gmungocJAL-2090 removed test for Java > 1.1 to enable transparency tree | commitdiff
2016-05-03 gmungocJAL-2050 hide introns also when fetching Ensembl xrefs... tree | commitdiff
2016-05-03 tcofoegbuJAL-2091 disable pagination buttons during initialisation tree | commitdiff
2016-05-03 tcofoegbuJAL-1563 JAL-2091 Added generic pagination for FTS... tree | commitdiff
2016-05-02 tcofoegbuJAL-1563 Fixed Uniprot FTS result-set count error,... tree | commitdiff
2016-04-29 tcofoegbumerge tree | commitdiff
2016-04-29 tcofoegbuJAL-1563 house keeping/updated API doc for new method... merge/JAL-1563_uniprot-free-text-search tree | commitdiff
2016-04-29 tcofoegbuJAL-1563 Further increased swing timer for search textf... tree | commitdiff
2016-04-29 gmungocJAL-2051 better checking of retrieved / duplicated... tree | commitdiff
2016-04-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-04-29 Jim ProcterJAL-192 need visible and actual sequence limits for... tree | commitdiff
2016-04-29 Jim ProcterJAL-192 fix bounds when no hidden regions, and when... tree | commitdiff
2016-04-29 Jim ProcterJAL-192 scale origin relative to start of reference... tree | commitdiff
2016-04-29 Jim ProcterJAL-966 JAL-1553
 todo: remove UI components from Colum... tree | commitdiff
2016-04-29 Jim ProcterJAL-1551 formatting
 tree | commitdiff
2016-04-29 Jim ProcterJAL-192 ‘efficiently’ locate visible bounds for a seque... tree | commitdiff
2016-04-29 Jim ProcterJAL-1551 formatting tree | commitdiff
2016-04-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-04-28 tcofoegbuJAL-1563 increased swing timer for search action from... tree | commitdiff
2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy tree | commitdiff
2016-04-28 tcofoegbuJAL-1563 Implemented hack to make table both scrollable... tree | commitdiff
2016-04-27 tcofoegbuJAL-1563 Added Id (Uniprot Id) to the dynamic column... tree | commitdiff
2016-04-27 Jim ProcterJAL-192 fix off-by-one for alignment ruler with no... tree | commitdiff
2016-04-27 Jim ProcterJAL-192 show reference sequence position and residue... tree | commitdiff
2016-04-27 tcofoegbuJAL-1563 Added fix to prevent swing timer from reinitia... tree | commitdiff
2016-04-27 Jim ProcterJAL-1366 JAL-2086 reinstate bolding of reference sequence tree | commitdiff
2016-04-27 Jim ProcterJAL-2085 JAL-2086 fix hiddenRepSequence and new referen... tree | commitdiff
2016-04-27 tcofoegbuJAL-1563 Modified Uniprot data column configurations... tree | commitdiff
2016-04-27 tcofoegbure-enabled new uniprot sequence fetcher on spike branch tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 fix broken cherry-pick conflict merge tree | commitdiff
2016-04-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 use new service to retrieve Rfam Seed alignment tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 disable RFAM(Full) source until we can retriev... tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 update URL for RFAM and PFAM sources tree | commitdiff
2016-04-26 tcofoegbumerge tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 allow prefix+<XFAMID>+suffix type URL signature tree | commitdiff
2016-04-26 tcofoegbuJAL-1563 reverted to old uniprot fetcher to enable... tree | commitdiff
2016-04-26 Jim ProcterJAL-2077 reinstate JAL-1554 fix for left-then-right... tree | commitdiff
2016-04-26 Jim ProcterJAL-2077 reinstate annotation label popup by handling... tree | commitdiff
2016-04-26 gmungocJAL-1981 catch any exception when setting QuaQua look... tree | commitdiff
2016-04-26 Jim ProcterMerge branch 'develop' into groovy/JAL-2074_upgradeto2.4.4 groovy/JAL-2074_upgradeto2.4.4 tree | commitdiff
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