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JAL-1807 explicit imports (jalview.controller)
[jalview.git] / src /
2015-06-06 Jim ProcterJAL-653 gff version number field tree | commitdiff
2015-06-06 Jim ProcterJAL-653 missing imports after rebase tree | commitdiff
2015-06-06 Jim ProcterJAL-653 allow a dummy sequence to take on attributes... tree | commitdiff
2015-06-05 tcofoegbuMerge branch 'bug/JAL-1760_restore-hidden-seqs' into... tree | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... tree | commitdiff
2015-06-05 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments tree | commitdiff
2015-06-05 Jim ProcterJAL-653 abstract sequence model to support file backed... tree | commitdiff
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped... tree | commitdiff
2015-06-05 gmungocJAL-1588 error dialog if Chimera project opened on... tree | commitdiff
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... tree | commitdiff
2015-06-05 gmungocJAL-1746 return empty string rather than null in getSta... tree | commitdiff
2015-06-05 gmungocJAL-1622 Chimera command timeout increased to 5 secs... tree | commitdiff
2015-06-05 gmungocJAL-1622 duplicate assignment removed (no functional... tree | commitdiff
2015-06-05 gmungocJAL-1753 JAL-1596 asynchronous command to Chimera ... tree | commitdiff
2015-06-05 gmungocJAL-1622 code tidy only, no functional change tree | commitdiff
2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concret... tree | commitdiff
2015-06-05 Jim ProcterJAL-845 jim @mungo: should this be in a package local... tree | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-06-05 Jim ProcterJAL-653 set the warningMessage for the file source... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 GFF attributes parsing mechanism, with first... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 trim initial tab in sequence feature ATTRIBUTES tree | commitdiff
2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequen... tree | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-06-05 Jim ProcterJAL-653 convenience method to resolve strand attribute... tree | commitdiff
2015-06-05 Jim ProcterJAL-1115 JAL-653 partial introduction of List interface... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 JAL-966 TODO and avoid NPE when desktop instanc... tree | commitdiff
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code... tree | commitdiff
2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name... tree | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-06-04 gmungocClear status bar message when initialisation complete tree | commitdiff
2015-06-04 gmungocJAL-1750 small tidy of AlignSeq.printMapping (+Junit) tree | commitdiff
2015-06-04 gmungocJAL-1544 spelling in javadoc only tree | commitdiff
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb() tree | commitdiff
2015-06-04 gmungocJAL-1747 close all windows on Quit (+small bug fix) tree | commitdiff
2015-06-04 gmungoctoString method added to aid viewing in the debugger tree | commitdiff
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... tree | commitdiff
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window' tree | commitdiff
2015-06-04 gmungocJAL-1743 View Chain sub-menu now being populated tree | commitdiff
2015-06-04 gmungocJAL-1753 statusPanel added (for ProgressBar); 'Fit... tree | commitdiff
2015-06-04 gmungocJAL-1753 ChimeraViewFrame hosts its own ProgressBar tree | commitdiff
2015-06-04 gmungocJAL-1742 don't offer to align another chain to the... tree | commitdiff
2015-06-04 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure... tree | commitdiff
2015-06-04 tcofoegbuclean up tree | commitdiff
2015-06-04 gmungocJAL-1421 generic collections in MCView package (+unit... tree | commitdiff
2015-06-04 tcofoegbuJAL-1756 bug-fix tree | commitdiff
2015-06-04 tcofoegbuJAL-1641 updated json schema to make it more generic... tree | commitdiff
2015-06-02 tcofoegbuJAL-1641 applet build fix tree | commitdiff
2015-06-01 Jim ProcterJAL-1370 group and alignment reference sequences are... tree | commitdiff
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package tree | commitdiff
2015-06-01 tcofoegbuJAL-1703 added tooltip hints to components of the Selec... tree | commitdiff
2015-06-01 tcofoegbuJAL-1734 updated progress bar messages tree | commitdiff
2015-05-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-29 tcofoegbuJAL-1748 house keeping tree | commitdiff
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-29 gmungocJAL-1753 declare field with interface type; check for... tree | commitdiff
2015-05-29 Jim ProcterMerge branch 'JAL-1755_npe_groupconsensus' into develop tree | commitdiff
2015-05-29 Jim ProcterJAL-1755 fix for NPE when setting up temporary variables tree | commitdiff
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-29 gmungocJAL-1753 duplicated code refactored to new class Progre... tree | commitdiff
2015-05-29 tcofoegbuJAL-1748 and employ preprocessing routine when return... tree | commitdiff
2015-05-29 tcofoegbuvalidate PDB selections on mouse release event tree | commitdiff
2015-05-28 tcofoegbuJAL-1700 made PDB service error mechanism more user... tree | commitdiff
2015-05-28 tcofoegbuJAL-1751 provided method to overide isCellEditable... tree | commitdiff
2015-05-28 tcofoegbuJAL-1749 reinstated the ability to view RNA structures tree | commitdiff
2015-05-28 tcofoegbuJAL-1740 minor house keeping tree | commitdiff
2015-05-27 tcofoegbuRemoved redundant classes and dependencies pulled in... tree | commitdiff
2015-05-27 tcofoegbuMerge branch 'features/JAL-1740_Decoup-BioJS' into... tree | commitdiff
2015-05-27 tcofoegbuJAL-1740 updated synch codes to use a git repo rather... features/JAL-1740_Decoup-BioJS tree | commitdiff
2015-05-26 tcofoegbuJAL-1627 bug fix to remove wierd space in Sequence... tree | commitdiff
2015-05-25 tcofoegbubuild fix tree | commitdiff
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into... tree | commitdiff
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB... tree | commitdiff
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into... tree | commitdiff
2015-05-22 tcofoegbuJAL-1745 improvement to retreive already downloaded... tree | commitdiff
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater tree | commitdiff
2015-05-20 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... tree | commitdiff
2015-05-20 tcofoegbuJAL-1739 added svid - serial version id to hold version... tree | commitdiff
2015-05-20 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-20 gmungocJAL-796 JAL-1652 better implementation (key binding... tree | commitdiff
2015-05-20 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop tree | commitdiff
2015-05-20 tcofoegbuJAL-1541 minor code clean up, and added test for BioJsH... tree | commitdiff
2015-05-19 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop tree | commitdiff
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... tree | commitdiff
2015-05-19 tcofoegbuJAL-1541 Modified BioJs exporter to take advantage... tree | commitdiff
2015-05-18 gmungocJAL-1663 detect tab out of RGB value; correct field... tree | commitdiff
2015-05-18 gmungocJAL-1663 apply new colour correctly; source formatting tree | commitdiff
2015-05-18 gmungocJAL-1652 Escape key now closes Find dialog tree | commitdiff
2015-05-15 gmungocJAL-1270 main method converted to JUnit test tree | commitdiff
2015-05-15 gmungocJAL-1270 main method converted to JUnit test 'as seen' tree | commitdiff
2015-05-15 gmungocJAL-1270 main method converted 'as seen' to JUnit tree | commitdiff
2015-05-15 gmungocJAL-1737 ignore non-positional annotations for display tree | commitdiff
2015-05-15 gmungocJAL-1270 added test for regex actually used; include... tree | commitdiff
2015-05-15 gmungocJAL-1270 main methods converted to JUnit tree | commitdiff
2015-05-13 gmungocJAL-1575 no-cache headers added to (empty) rest response tree | commitdiff
2015-05-13 gmungocJAL-1712 fixes/tests for Castor binding of EMBL XML... tree | commitdiff
2015-05-13 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-13 tcofoegbuFixed some broken tests tree | commitdiff
2015-05-13 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
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