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JAL-2631 JAL-2623 JAL-2624 JAL-2630 JAL-147 JAL-2034 release notes and signoff
[jalview.git] / src /
2017-08-01 gmungocJAL-2611 reinstate missed merge - again! tree | commitdiff
2017-08-01 gmungocMerge branch 'feature/JAL-2611' into develop tree | commitdiff
2017-08-01 gmungocMerge branch 'bug/JAL-2630gradColourUpdateOverview... tree | commitdiff
2017-07-31 gmungocJAL-2623 updated Overview/structure on input of thresho... bug/JAL-2630gradColourUpdateOverview tree | commitdiff
2017-07-31 gmungocJAL-2622 don't vertical scroll wrapped alignment id... tree | commitdiff
2017-07-31 gmungocJAL-2623 JAL-2015 set Below Threshold on FeatureColour... tree | commitdiff
2017-07-31 gmungocJAL-2630 applet update overview on release of threshold... tree | commitdiff
2017-07-28 gmungocJAL-147 corrected status bar message for wrapped scroll... tree | commitdiff
2017-07-28 gmungocJAL-2622 no vertical scroll of wrapped alignment from... tree | commitdiff
2017-07-28 gmungocJAL-2006 squash rounding errors at min/max threshold... tree | commitdiff
2017-07-28 gmungocJAL-2630 update Overview/structure from graduated colou... tree | commitdiff
2017-07-22 gmungocJAL-2624 check feature colour threshold when colouring... tree | commitdiff
2017-07-22 gmungocJAL-2623 initialise colour threshold slider correctly tree | commitdiff
2017-07-22 kiramtMerge branch 'develop' into feature/JAL-2611 tree | commitdiff
2017-07-18 kiramtJAL-2611 Tidies, initial unit tests tree | commitdiff
2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView tree | commitdiff
2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll positi... tree | commitdiff
2017-07-18 gmungocJAL-147 draw up to last position of wrapped alignment! tree | commitdiff
2017-07-18 kiramtJAL-2611 Better tree | commitdiff
2017-07-17 kiramtJAL-2611 Still not happy with behaviour tree | commitdiff
2017-07-14 kiramtJAL-2611 First pass, not thrilled with hidden column... tree | commitdiff
2017-07-14 kiramtMerge branch 'feature/JAL-2613' into feature/JAL-2611 tree | commitdiff
2017-07-14 kiramtJAL-2611 Pre-merge checkin tree | commitdiff
2017-07-13 kiramtJAL-2611 Added overview dimensions test for position... tree | commitdiff
2017-07-13 kiramtJAL-2613 Unit tests and a fix. Phew. tree | commitdiff
2017-07-12 kiramtJAL-2613 Centre alignment at click point tree | commitdiff
2017-07-06 gmungocJAL-147 prevent vertical Overview box movement in wrapp... tree | commitdiff
2017-07-06 gmungocJAL-147 unit test for hide/show sequences update Viewpo... tree | commitdiff
2017-07-06 gmungocJAL-2605 ensure correct scale width calculation tree | commitdiff
2017-07-05 gmungocJAL-147 don't update overview for column selection... tree | commitdiff
2017-07-05 gmungocJAL-147 additions to unit test, check for negative... tree | commitdiff
2017-07-05 gmungocJAL-147 prevent overview box move up over hidden first... tree | commitdiff
2017-07-04 gmungocJAL-147 revised update of startSeq, endSeq on unhide... tree | commitdiff
2017-07-04 gmungocJAL-147 unit tests added, unused setEndRes removed tree | commitdiff
2017-07-04 gmungocJAL-147 corrected update of ViewportRanges for show... tree | commitdiff
2017-07-04 gmungocJAL-147 update ViewportRanges height after show/hide... tree | commitdiff
2017-07-04 gmungocJAL-147 remove redundant calls to update overview panel tree | commitdiff
2017-07-04 gmungocJAL-2608 tidy up OverviewPanel when closed tree | commitdiff
2017-07-04 gmungocJAL-147 call method that sets visible width when drawin... tree | commitdiff
2017-07-04 gmungocJAL-147 extract local variable for ease of debugging tree | commitdiff
2017-07-03 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView tree | commitdiff
2017-07-03 gmungocJAL-147 correct width out-by-one drawing ids tree | commitdiff
2017-07-03 gmungocJAL-147 don't scroll Overview box outside panel dimensions tree | commitdiff
2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scrol... tree | commitdiff
2017-07-03 gmungocJAL-147 don't draw ScalePanel when in wrapped mode tree | commitdiff
2017-07-03 gmungocJAL-2034 don't refresh Overview for selection in id... tree | commitdiff
2017-06-30 gmungocJAL-147 don't page up above origin, repaint ids for... tree | commitdiff
2017-06-30 gmungocMerge branch 'bug/JAL-2597' into develop tree | commitdiff
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class tree | commitdiff
2017-06-30 gmungocJAL-2602 same fix for applet tree | commitdiff
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview... tree | commitdiff
2017-06-29 kiramtJAL-2597 Fix and unit test bug/JAL-2597 tree | commitdiff
2017-06-29 gmungocJAL-2605 exclude left/right scale in sequence column... tree | commitdiff
2017-06-28 gmungocMerge branch 'bug/JAL-2600resizeflicker' into develop tree | commitdiff
2017-06-28 kiramtJAL-2600 Tidies bug/JAL-2600resizeflicker tree | commitdiff
2017-06-28 kiramtJAL-2600 updates following review tree | commitdiff
2017-06-27 kiramtJAL-2600 Tidies tree | commitdiff
2017-06-27 kiramtJAL-2600 Abandoned fastpaint for resize; now full repai... tree | commitdiff
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi... tree | commitdiff
2017-06-27 kiramtJAL-2600 Add in IdCanvas and checks for 0 size images tree | commitdiff
2017-06-27 kiramtJAL-2600 vertical fast paint too tree | commitdiff
2017-06-27 kiramtJAL-2600 fast painting on resize tree | commitdiff
2017-06-26 kiramtJAL-2600 reinstate original behaviour tree | commitdiff
2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring... tree | commitdiff
2017-06-15 kiramtMerge remote-tracking branch 'origin/develop' into... bug/JAL-2591 tree | commitdiff
2017-06-15 gmungocMerge branch 'bug/JAL-2589gapColour' into develop tree | commitdiff
2017-06-12 gmungocJAL-2577 mirror select/hide by annotation in split... tree | commitdiff
2017-06-12 kiramtJAL-2591 Updates following code review tree | commitdiff
2017-06-12 gmungocJAL-2577 mirror hide/select columns by annotation acros... tree | commitdiff
2017-06-09 gmungocJAL-2589 render colour scheme gap colour in overview bug/JAL-2589gapColour tree | commitdiff
2017-06-09 gmungocJAL-2594 avoid stack trace creating feature on gapped... tree | commitdiff
2017-06-08 gmungocJAL-2386 JAL-2570 use ResidueShader copy constructor... bug/JAL-2386groupConservationColouring tree | commitdiff
2017-06-08 kiramtMerge branch 'bug/JAL-2586' into develop tree | commitdiff
2017-06-08 kiramtJAL-2586 Clarification to URL link code bug/JAL-2586 tree | commitdiff
2017-06-08 kiramtJAL-2591 made redraw volatile tree | commitdiff
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... tree | commitdiff
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing. tree | commitdiff
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete) tree | commitdiff
2017-06-07 kiramtJAL-2591 More refactoring (incomplete) tree | commitdiff
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string... tree | commitdiff
2017-06-07 kiramtJAL-2591 updated HiddenColumns::findHiddenRegionPositio... tree | commitdiff
2017-06-07 kiramtJAL-2591 Overview changes ported to applet tree | commitdiff
2017-06-07 kiramtJAL-2591 More rationalising of hiddencols tree | commitdiff
2017-06-07 gmungocJAL-2386 ensure group conservation shading is applied... tree | commitdiff
2017-06-07 kiramtJAL-2591 Increased granularity of overview panel update... tree | commitdiff
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage tree | commitdiff
2017-06-06 kiramtJAL-2591 Removed getHiddenRegions()==null checks which... tree | commitdiff
2017-06-06 kiramtJAL-2591 Added readwrite locking on HiddenColumns tree | commitdiff
2017-06-06 gmungocJAL-2589 correct colour for Gap in Score and User Defin... tree | commitdiff
2017-06-06 kiramtMerge remote-tracking branch 'origin/bug/JAL-2576'... tree | commitdiff
2017-06-05 Jim ProcterJAL-2590 patch for rendering eggnog trees with polytomi... tree | commitdiff
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2576' into develop tree | commitdiff
2017-06-05 kiramtJAL-2586 Checkstyle flagged fix of unintended fall... tree | commitdiff
2017-06-04 Jim ProcterJAL-2228 java 1.7 compliance tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 only hide/show columns intersecting with curre... tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 get bitset representing hidden columns tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 use HiddenColumns.hideMarkedBits and take... tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 method taking a BitSet for hiding columns tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 bug fix - BitSet.set is [start,end+1) tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 ‘Hide Insertions’ now operates on selection... tree | commitdiff
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