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Merge branch '2_5_1_rna_merge' of https://source.jalview.org/git/jalview into 2_5_1_r...
[jalview.git] / src /
2011-09-29 janengelhardtSequence name in VARNA windows was not correct (always... tree | commitdiff
2011-08-28 janengelhardtIncluding of VARNAv-3.9; tree | commitdiff
2011-08-16 janengelhardtJAL-842; Text element containing the structure is not... tree | commitdiff
2011-08-15 janengelhardtJAL-891; Tooltips for Structure logos implemented; tree | commitdiff
2011-08-15 janengelhardtJAL-878; Structures associated to a sequence are availa... tree | commitdiff
2011-08-15 janengelhardtJAL-891; Labeling of structure conservation is improved... tree | commitdiff
2011-08-15 janengelhardtJAL-891; Sorting of Structure logo implemented; bug... tree | commitdiff
2011-08-11 jprocteravoid NPE for null annotation element columns JAL-896 tree | commitdiff
2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to Align... tree | commitdiff
2011-08-10 janengelhardtJAL-885; Structure conservation row is just added if... tree | commitdiff
2011-08-09 janengelhardtJAL-891; base-pair logos can now be activated for structure tree | commitdiff
2011-08-08 janengelhardtJAL-891; structure logo is adapted to two char's; Missi... tree | commitdiff
2011-08-08 janengelhardtJAL-891; sequence logos are available on structure... tree | commitdiff
2011-08-04 jprocterJAL-896 - patch to ensure arrows in different direction... tree | commitdiff
2011-08-04 jprocterJAL-883 - refactored and debugged arrow, stem and helix... tree | commitdiff
2011-08-03 janengelhardtJAL-885; Multi-helix bug is solved; One should think... tree | commitdiff
2011-07-31 janengelhardtJAL-885; StructureConservation row is displayed at... tree | commitdiff
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java... tree | commitdiff
2011-07-25 janengelhardtsome print statements to test things tree | commitdiff
2011-07-25 janengelhardtJAL-882; VARNA crashed when non-standard gaps where... tree | commitdiff
2011-07-25 janengelhardtJAL-878; Additional structures with a 'GR' tag in Stock... tree | commitdiff
2011-07-25 janengelhardtJAL-842; toy example to insert nucleotides in sequences... tree | commitdiff
2011-07-25 janengelhardtJAL-842; Implement transmitting of Jalview Sequence... tree | commitdiff
2011-07-25 janengelhardtJAL-842: some bugfixes; tree | commitdiff
2011-07-25 janengelhardtJAL-842; Added the TextField to edit structure in VARNA tree | commitdiff
2011-07-25 janengelhardtJAL-842; trimming single structures for single sequence... tree | commitdiff
2011-07-25 janengelhardtJAL-842; Give Varna frames name for window organizer... tree | commitdiff
2011-07-25 janengelhardtVarna external frame bug solved tree | commitdiff
2011-07-25 janengelhardtReorganize the class structure, unfortunately breaks... tree | commitdiff
2011-07-25 janengelhardtclean code tree | commitdiff
2011-07-25 janengelhardtFurther structure accessing feature tree | commitdiff
2011-07-25 janengelhardtChanged location of VARNAv3-8b.jar; small changes tree | commitdiff
2011-07-25 janengelhardtjal-842; sequence transmitting to Varna included tree | commitdiff
2011-07-25 janengelhardtJAL-842, AppVarnaBinding was filled with a minimalistic... tree | commitdiff
2011-07-25 janengelhardtJAL-842, Further creation of VARNA classes (probably... tree | commitdiff
2011-07-25 janengelhardtContainer for VARNA classes are created according to... tree | commitdiff
2011-07-25 janengelhardtJAL-841; Structure trigger token in jalview.io.Alignmen... tree | commitdiff
2011-07-25 janengelhardt'Fix Group Colour bug' merge; JAL-580 tree | commitdiff
2011-07-25 janengelhardt'Update to Covariaton color scheme' merge; JAL-580 tree | commitdiff
2011-07-25 janengelhardt'Add Rfam database sequence retrieval' merged; JAL-580 tree | commitdiff
2011-07-25 janengelhardtStart merging of Laurens Code tree | commitdiff
2011-07-25 janengelhardtNew branch created and author list changed to test... tree | commitdiff
2011-07-22 jproctertodo for JAL-860 - associate multiple sequences with... tree | commitdiff
2011-07-22 jprocterensure propagation of colour change on annotation updat... tree | commitdiff
2011-07-22 jprocterfix NPE when annotation colourgradient is applied tree | commitdiff
2011-07-22 jproctercode style tree | commitdiff
2011-07-22 jprocterdefault parameter for colours in annotation shading... tree | commitdiff
2011-07-22 jproctermethod to get a user default colour (JAL-234) tree | commitdiff
2011-07-21 jprocterretrieve all sequences matching a particular name ... tree | commitdiff
2011-07-21 jprocterensure contents of hash is extended JAL-876 tree | commitdiff
2011-07-18 jprocterfixed mouseover problem - still need to deal with flick... tree | commitdiff
2011-07-10 jprocterprogress when saving state (JAL-870) and hack to trap... tree | commitdiff
2011-07-09 jprocterdocumentation for menu item JAL-860 tree | commitdiff
2011-07-09 jproctermenu item and constructor to open a bunch of structures... tree | commitdiff
2011-07-09 jprocterrefactored from PopupMenu (for JAL-860) tree | commitdiff
2011-07-09 jproctertodo re JAL-732 tree | commitdiff
2011-07-09 jprocterJAL-868 todo tree | commitdiff
2011-07-08 jprocteropen each query result from an alignment datasource... tree | commitdiff
2011-07-07 jproctercomment re JAL-153 tree | commitdiff
2011-07-07 jprocterSet job title correctly and pass reason why tree | commitdiff
2011-07-07 jprocterextract sequence from DNA bases like 'DG' (JAL-866) tree | commitdiff
2011-07-06 jprocterensure selseq is trimmed to just sequences included... tree | commitdiff
2011-07-05 jprocterRevert "partial patch for JAL-411 - text rendered above... tree | commitdiff
2011-07-05 jprocterpartial patch for JAL-411 - text rendered above features tree | commitdiff
2011-07-05 jprocterRevert "Revert "needed for linkedapplets_ng.html (JAL... tree | commitdiff
2011-07-05 jprocterRevert "needed for linkedapplets_ng.html (JAL-859,JAL... tree | commitdiff
2011-07-05 jprocterneeded for linkedapplets_ng.html (JAL-859,JAL-469) tree | commitdiff
2011-07-05 jprocterwhole frame should be validated. tree | commitdiff
2011-07-05 jprocterignore any events after manager has already been finalized. tree | commitdiff
2011-07-05 jprocterrefactor to send list of model filenames involved in... tree | commitdiff
2011-07-05 jprocter(JAL-856,JAL-621) tree | commitdiff
2011-07-04 jprocterjmb isn't created yet, so use another SSM provider tree | commitdiff
2011-07-03 jprocterTODO re JAL-433 - filter events if alignFrame is specif... tree | commitdiff
2011-07-03 jprocterdocumentation (JAL-859, JAL-816, JAL-621) tree | commitdiff
2011-07-03 jprocterextracted jalviewlite API calls as separate interface... tree | commitdiff
2011-06-30 jprocterset initial annotation panel height appropriately ... tree | commitdiff
2011-06-29 jprocterrepaint image buffer height change (JAL-564) and ensure... tree | commitdiff
2011-06-29 jprocterrepaint image buffer resize when panel height changes... tree | commitdiff
2011-06-29 jprocterpreliminary patch to reduce problem observed in JAL-546 tree | commitdiff
2011-06-29 jprocterensure annotation height adjuster doesn't disappear... tree | commitdiff
2011-06-28 jprocterfixes JAL-849 - double check after waiting a bit that... tree | commitdiff
2011-06-24 jprocterfix to preserve sequence numbering in MSF (JAL-847) tree | commitdiff
2011-06-23 jprocterjmb isn't created yet, so use another SSM provider tree | commitdiff
2011-06-23 jprocterpatch for JAL-846 made targetChain mapping constraint... tree | commitdiff
2011-05-30 jprocterbug for clients using NJTree directly - pwtype should... tree | commitdiff
2011-05-30 jprocterfirst patch for JAL-838 - allow new typed of PID calcs tree | commitdiff
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager... tree | commitdiff
2011-05-17 jprocterinterface for objects at root of a jalview session's tree | commitdiff
2011-05-17 jprocterinterface for handlers of alignmentViewPanel events tree | commitdiff
2011-05-17 jproctercruisecontrol again tree | commitdiff
2011-05-17 jprocteranother cc test tree | commitdiff
2011-05-17 jproctertest cruisecontrol tree | commitdiff
2011-05-17 jproctertest cruisecontrol tree | commitdiff
2011-05-17 jprocterensure all colour statements added to string set tree | commitdiff
2011-05-05 jprocteruncommentable debug message for JAL-771 tree | commitdiff
2011-05-05 jprocterimproved javascript callback execution thread and provi... tree | commitdiff
2011-05-05 jprocterseparation of jmol script command generation from jmol... tree | commitdiff
2011-05-05 jprocterjavadoc and informative error message when external... tree | commitdiff
2011-05-05 jprocterensure feature renderer settings come from the given... tree | commitdiff
2011-05-05 jprocteradded simple stdout debug function tree | commitdiff
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