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JAL-1198 JAL-1197 migrated to IA 2012 and new VM
[jalview.git] / src /
2012-04-10 jprocterMerge branch 'Tcoffee_JAL-1065' of https://source.jalvi... tree | commitdiff
2012-04-09 Paolo Di TommasoJAL-1065 - Visualize T-Coffee quality scores for an... tree | commitdiff
2012-04-09 Paolo Di TommasoJAL-1066 - T-Coffee color scheme + signature change... tree | commitdiff
2012-04-09 Paolo Di TommasoJAL-1067 - T-Coffee score file reader tree | commitdiff
2012-04-09 Paolo Di TommasoJAL-1067 - T-Coffee score file parser tree | commitdiff
2012-02-12 Jim Procter(JAL-1016) noted position where race condition occurs tree | commitdiff
2012-02-12 Jim Procter(JAL-1022) ensure all Jmol model filenames are normalis... tree | commitdiff
2012-02-12 Jim Procter(JAL-1022) reverted to original strategy of escaping... tree | commitdiff
2012-02-12 Jim Procter(JAL-1050) ensure all filenames passed in to the load... tree | commitdiff
2012-02-12 Jim Procter(JAL-1025 JAL-1022) File based equivalence used to... tree | commitdiff
2012-02-12 Jim Procter(JAL-1049) only store state reference for sequence... tree | commitdiff
2012-02-12 Jim ProcterJAL-1025 JAL-1022 use File based equivalence to map... tree | commitdiff
2012-02-12 Jim ProcterJAL-715 - remove platform dependent includes tree | commitdiff
2011-12-08 jprocter(JAL-1023) ensure filename is properly escaped before... tree | commitdiff
2011-12-08 jprocterremove commented lines tree | commitdiff
2011-12-08 jproctersimple escape utility class for JAL-1023 patch tree | commitdiff
2011-11-21 jprocter(JAL-368) ensure window never gets a negative Y coordin... tree | commitdiff
2011-11-20 jprocter(JAL-1004) add mouse listener to internal panel tree | commitdiff
2011-11-09 jprocter(JAL-986) rendering to imageMap counts as rendering... tree | commitdiff
2011-11-09 jprocter(JAL-985,JAL-986) documentation and tooltips tree | commitdiff
2011-11-09 jprocter(JAL-985,JAL-986) allow different ID margin calculation... tree | commitdiff
2011-11-09 jprocter(JAL-985,JAL-986) preference widgets for settings tree | commitdiff
2011-11-09 jprocter(JAL-985,JAL-986) preferences documentation tree | commitdiff
2011-11-09 jprocter(JAL-986) getter for integer user preference properties tree | commitdiff
2011-11-04 jprocter(JAL-980,JAL-982) - applet console only allows console... tree | commitdiff
2011-11-04 jprocter(JAL-980) update binding for refactored Jmol constants... tree | commitdiff
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade... tree | commitdiff
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups... tree | commitdiff
2011-10-21 jprocter(JAL-962) allow group visibility to be specified before... tree | commitdiff
2011-10-03 jprocterremoved unnecessary parameters and changed alignment... tree | commitdiff
2011-09-27 jprocterpatch name, reference and URL for Multi-Harmony : JAL-724 tree | commitdiff
2011-09-27 jprocterensure server errors return a URL and response document... tree | commitdiff
2011-09-27 jprocteruse jalview properties preference to enable RSBS editor... tree | commitdiff
2011-09-27 jproctersame overzeaolous logic (JAL-915) tree | commitdiff
2011-09-27 jprocterbackout overzealous logic disabling feature links in... tree | commitdiff
2011-09-27 jprocterNPE fix tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-09-26 jproctertweaked dialog layout. should consider refactoring tree | commitdiff
2011-09-26 jproctermake news window a modal dialog on the jalview desktop... tree | commitdiff
2011-09-26 jprocteravoid deprecation and ensure dialog close event is... tree | commitdiff
2011-09-25 jprocterorganise imports tree | commitdiff
2011-09-25 jproctermore focus fixing (JAL-943) tree | commitdiff
2011-09-25 jprocterfix logic to ensure first check for news is correct... tree | commitdiff
2011-09-23 jproctertry even harder to get focus - for benefit of windows... tree | commitdiff
2011-09-23 jprocterensure blog window gets put to front after dialogs... tree | commitdiff
2011-09-22 jprocterrefactor and remove excess imports (JAL-943) tree | commitdiff
2011-09-22 jprocterjalview rss reader based on jswingreader (JAL-943) tree | commitdiff
2011-09-16 jprocterJAL-747 - made warning message friendlier and more... tree | commitdiff
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic... tree | commitdiff
2011-09-16 jprocternumerically ataxic comments. tree | commitdiff
2011-09-16 jprocterJAL-574 added option to enable/disable 'follow selectio... tree | commitdiff
2011-09-16 jprocterJAL-940 - removed legacy service options from preferenc... tree | commitdiff
2011-09-16 jprocterJAL-468 typo and label length in dialog tree | commitdiff
2011-09-16 jprocterpatch for JAL-935 - warning messages raised when alignm... tree | commitdiff
2011-09-16 jprocterJAL-468 JAL-936 sort alignment by tree and autosort... tree | commitdiff
2011-09-15 jprocterJAL-860 fixed grammar for one structure vs many structu... tree | commitdiff
2011-09-15 jprocterJAL-854 tweaked menu layout so services appear before... tree | commitdiff
2011-09-14 jproctertypo tree | commitdiff
2011-09-14 jprocterJAL-234 - default button to reset min/max colours and... tree | commitdiff
2011-09-14 jprocterJAL-934 - refactor to use label font functions tree | commitdiff
2011-09-14 jprocterJAL-934 - refactor to use label font functions tree | commitdiff
2011-09-14 jprocterJAL-934 - standard label font functions tree | commitdiff
2011-09-14 jprocterpatch for NPE (not clear if NPE is evidence of deeper... tree | commitdiff
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations... tree | commitdiff
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations... tree | commitdiff
2011-09-14 jprocterfix for JAL-930 tree | commitdiff
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations... tree | commitdiff
2011-09-12 jprocterJAL-927 ensure api method calls that affect GUI state... tree | commitdiff
2011-08-30 jprocterpatch for JAL-731 tree | commitdiff
2011-08-30 jprocterpatch for JAL-729 - NPE avoided and cut and paste impor... tree | commitdiff
2011-08-30 jprocterJAL-915 - ensured that exceptions are not raised in... tree | commitdiff
2011-08-30 jprocterfix for JAL-917 - ensure all sequence strings are made... tree | commitdiff
2011-08-30 jprocterfix for JAL-917 - ensure all sequence strings are made... tree | commitdiff
2011-08-30 jprocterJAL-715 - conditional to hide the RSBS service editing... tree | commitdiff
2011-08-30 jprocterJAL-715 rsbs service editing tree | commitdiff
2011-08-30 jprocterJAL-715 JalviewDialog for RSBS service editing pane tree | commitdiff
2011-08-30 jprocterJAL-715 store/reset .jalview_properties setting for... tree | commitdiff
2011-08-30 jprocterJAL-715 serialise and deserialise multiple rest client... tree | commitdiff
2011-08-30 jprocterJAL-715 - notify user of parsing problems for results... tree | commitdiff
2011-08-30 jprocterretrieve URL for datasource of packed set tree | commitdiff
2011-08-30 jprocterensure parsing errors and 'lack of data' errors are... tree | commitdiff
2011-08-30 jprocterJAL-715 need to URLencode constant values when serializ... tree | commitdiff
2011-08-29 jprocterJAL-715 - grammar for warning message. tree | commitdiff
2011-08-29 jprocterJAL-919, JAL-715 - prototype service editing dialog... tree | commitdiff
2011-08-29 jprocterJAL-633, JAL-591 - refactored ArgumentI.getValue from... tree | commitdiff
2011-08-29 jprocterrefactored popup dialog boilerplate code to own class tree | commitdiff
2011-08-29 jprocterJAL-633 simple concrete parameter and option objects... tree | commitdiff
2011-08-29 jprocterJAL-633, JAL-591 - refactored ArgumentI.getValue from... tree | commitdiff
2011-08-25 jprocterconstructor only needs GUI container interface tree | commitdiff
2011-08-25 jprocterJAL-591 - refactored web service parameter dialog to... tree | commitdiff
2011-08-25 jprocterJAL-715 - better validation logic tree | commitdiff
2011-08-25 jprocterdebug dialog tree | commitdiff
2011-08-25 jprocterJAL-715 - prevent empty elements being generated tree | commitdiff
2011-08-24 jprocterJAL-715 dialog for interactively editing a new or exist... tree | commitdiff
2011-08-24 jprocterJAL-715 bugfixes and refactor of parsing code for use... tree | commitdiff
2011-08-24 jprocterrefactor labelled button creator to JvSwingUtils tree | commitdiff
2011-08-23 jprocterJAL-715 - simple tests and functions for IO of service... tree | commitdiff
2011-08-23 jprocterJAL-715 - allow rest service attributes to be exported... tree | commitdiff
2011-08-19 jprocterJAL-908,JAL-701 - patch applet to strip HTML tags from... tree | commitdiff
2011-08-19 jprocterJAL-908 JAL-701 refactored HTML escape/unescape code... tree | commitdiff
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