JAL-2309 Made test timeout slightly longer
[jalview.git] / src /
2016-11-08 tcofoegbuJAL-2292 updated method calls
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation...
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ...
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links...
2016-11-04 tcofoegbuJAL-2292 squashed bug that breaks feature mapping for...
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility...
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-04 tcofoegbuJAL-2195 JAL-2262 house keeping
2016-11-04 tcofoegbuJAL-2292 fix for wrong mapping output in sequence mappi...
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char...
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-04 kiramtJAL-2282 Better check for existing url links
2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent!
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;...
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked...
2016-11-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from...
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link...
2016-11-02 kiramtJAL-2282 Refactor applet too
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
2016-11-02 gmungocJAL-98 ProfileI interface for Profile
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
2016-11-02 gmungocJAL-98 wording "negatively conserved" now "absence...
2016-11-02 kiramtJAL-2282 Code tidy
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces...
2016-11-02 kiramtJAL-2282 URLLink unit tests updated
2016-11-01 gmungocConservation now using ResidueCount; tests added
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash...
2016-11-01 gmungocJAL-98 typo in javadoc
2016-11-01 gmungocJAL-98 simplified repeat() method
2016-11-01 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif...
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac...
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION...
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases...
2016-10-31 gmungocJAL-98 round when formatting dec places
2016-10-31 kiramtForce double-clicking to use sequence_id cases and...
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC...
2016-10-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-10-27 tcofoegbuJAL-2280 Improvement to enable drag'n'drop association...
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils
2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box
2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop
2016-10-26 gmungocJAL-2286 modal residue check + commenting
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has...
2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold...
2016-10-26 tcofoegbuMerge branch 'features/JAL-2284_export-biojsmsa-via...
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli
2016-10-25 gmungocJAL-2286 use constant for fixed colours
2016-10-25 gmungocJAL-98 javadoc corrected
2016-10-25 gmungocJAL-98 javadoc added
2016-10-25 gmungocJAL-98 minor fixes to / tests for annotation derivation
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-25 tcofoegbuMerge branch 'bug/JAL-2277_html-output-wrapped-mode...
2016-10-25 tcofoegbuJAL-2277 Improvement to support html+svg export in... bug/JAL-2277_html-output-wrapped-mode
2016-10-25 gmungocJAL-98 field comments updated
2016-10-25 gmungocJAL-98 small efficiency fix + commenting
2016-10-25 gmungocJAL-98 javadoc / comments updated
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-24 gmungocJAL-98 fixme comment removed - nothing to do
2016-10-24 gmungocJAL-98 ResidueCount 100% test coverage (and bug fixes!)
2016-10-24 kiramtMerge branch 'develop' of https://source.jalview.org...
2016-10-24 kiramtUnit tests for UrlLink bug/JAL-2281JAL-2282
2016-10-24 Jim ProcterMerge branch 'bug/JAL-2272cmdClickGroupEdit' into develop
2016-10-24 gmungocJAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl... bug/JAL-2272cmdClickGroupEdit
2016-10-24 kiramtFixed dialog box messages in English and Spanish. Adjus...
2016-10-24 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-24 kiramtCorrect Preferences to check for SEQUENCE_NAME as well...
2016-10-24 gmungocJAL-2283 set 'by conservation' correctly when changing...
2016-10-24 kiramtCode tidy up. Unit test passes.
2016-10-22 kiramtWorking links menu
2016-10-21 kiramtFactored URL Link constants out into UrlConstants file.
2016-10-17 kiramtMerge remote-tracking branch 'origin/bug/JAL-1552dragnd...
2016-10-17 kiramtacceptDrop call added before getTransferable in alignme... bug/JAL-1552dragndroptake2
2016-10-17 tcofoegbuJAL-2262 JAL-2195 Improvement to set PDBId availability...
2016-10-17 kiramtRe-attempt to fix JAL-1552 by removing extra calls...
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties
2016-10-13 gmungocJAL-2253 2 second timeout on ping URL, default 5 minute... feature/JAL-2553ensemblGenomes
2016-10-13 gmungocMerge branch 'releases/Release_2_10_Branch' into develop
2016-10-13 gmungocJAL-1479 revise warning message to suit all contexts bug/JAL-2044jmolModelBinding
2016-10-13 gmungocJAL-2044 increase Jmol file load timeout from 5 to...
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has...
2016-10-13 gmungocJAL-2044 include model name in progress bar message...
2016-10-11 tcofoegbuMerge branch 'features/JAL-2039_Offer_cached_structuref...
2016-10-11 tcofoegbuJAL-2039 improvement to offer cached structure view... features/JAL-2039_Offer_cached_structurefiles_immediately
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop
2016-10-11 gmungocJAL-2241 check for null jprovider when processing New...
2016-10-11 kiramtJAL-1552 added acceptDrop call before getTransferable... bug/JAL-1552dragndropurl
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop
2016-10-11 gmungocJAL-1479 small tidy of error message when Sifts mapping...
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels
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