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JAL-2586 Clarification to URL link code
[jalview.git] / src /
2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation... tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 test if an annotation is ‘whitespace’ tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp... tree | commitdiff
2017-05-11 kiramtJAL-2491 Unit tests and updates tree | commitdiff
2017-05-10 kiramtJAL-2491 Make it work with cursor movement tree | commitdiff
2017-05-10 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-10 kiramtJAL-2522 Fix to cursor scrolling tree | commitdiff
2017-05-10 kiramtJAL-2491 Cursor scrolling tree | commitdiff
2017-05-09 Jim ProcterJAL-2509 extend set of brackets recognised by stockholm... tree | commitdiff
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 output secondary structure regardless of prese... tree | commitdiff
2017-05-09 kiramtJAL-2491 Tidies and more refactoring tree | commitdiff
2017-05-09 kiramtJAL-2491 Resolved highlighting and initialisation problems tree | commitdiff
2017-05-09 tcofoegbuJAL-2465 fix to dynamically specify data source type... tree | commitdiff
2017-05-09 gmungocJAL-1632 correct i18n and NPE tree | commitdiff
2017-05-09 kiramtJAL-2388 Added checkbox to toggle hidden columns menu... tree | commitdiff
2017-05-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-08 kiramtJAL-2491 More wrap corrections tree | commitdiff
2017-05-08 gmungocJAL-1632 i18n for warning messages tree | commitdiff
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'... tree | commitdiff
2017-05-08 kiramtJAL-2491 Tweaks to avoid scroll problems at bottom... tree | commitdiff
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515 tree | commitdiff
2017-05-08 kiramtJAL-2512 And applet tree | commitdiff
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour... tree | commitdiff
2017-05-08 kiramtJAL-2491 Started moving other scrolling fns into viewpo... tree | commitdiff
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... tree | commitdiff
2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 tcofoegbuJAL-2484 adjusted default cache settings panel's left... tree | commitdiff
2017-05-05 kiramtJAL-2491 Scrolling and interaction with overview/find... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling tree | commitdiff
2017-05-04 tcofoegbuJAL-1648 improvements: enter key closes the popup and... tree | commitdiff
2017-05-04 tcofoegbuJAL-1648 resolved CR-JAL-41 review issues tree | commitdiff
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque... tree | commitdiff
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed tree | commitdiff
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... tree | commitdiff
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types... tree | commitdiff
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota... tree | commitdiff
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... tree | commitdiff
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices tree | commitdiff
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat... tree | commitdiff
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test tree | commitdiff
2017-05-03 kiramtJAL-2491 Tidies tree | commitdiff
2017-05-03 kiramtJAL-2491 Wrapped panel scrolling tree | commitdiff
2017-05-03 Jim ProcterMerge branch 'features/JAL-2432_annotbypercent' into... tree | commitdiff
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent tree | commitdiff
2017-05-03 Jim ProcterJAL-1933 show occupancy in tooltip for row tree | commitdiff
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value... tree | commitdiff
2017-05-03 Jim ProcterJAL-2432 applet: only enable percent checkbox when... tree | commitdiff
2017-05-03 Jim ProcterJAL-2432 percentage checkbox follows threshold value... tree | commitdiff
2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0 tree | commitdiff
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox tree | commitdiff
2017-05-03 Jim ProcterJAL-2432 simplify code tree | commitdiff
2017-05-03 kiramtJAL-2491 sort of working overview/find interaction... tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection... tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons... tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for... tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout tree | commitdiff
2017-05-02 gmungocJAL-2447 EXPERIMENTAL preference (option in Tools menu) features/JAL-2447experimentalFlag tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop tree | commitdiff
2017-05-02 gmungocJAL-2499 inlined two 1-line methods tree | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-02 kiramtJAL-2491 first addition of new event tree | commitdiff
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-01 tcofoegbuJAL-2482 bug fix tree | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-05-01 tcofoegbuJAL-2465 missed commit for refactore renaming of getPdb... tree | commitdiff
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... tree | commitdiff
2017-05-01 tcofoegbuJAL-2376 copied out patch from Phyre branch tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 use constant for preference token tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations tree | commitdiff
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy tree | commitdiff
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
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