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Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into trialMerge
[jalview.git] / src /
2018-10-31 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into... feature/JAL-3144noJTree tree | commitdiff
2018-10-31 gmungocMerge branch 'Jalview-BH/JAL-3026' into feature/JAL... tree | commitdiff
2018-10-31 gmungocJAL-3026 skip unsupported HttpURLConnection methods... tree | commitdiff
2018-10-30 gmungocJAL-3144 left aligned looks better (and works in Jalvie... tree | commitdiff
2018-10-30 gmungocJAL-3144 query URL corrected tree | commitdiff
2018-10-30 gmungocJAL-3144 close SequenceFetcher before opening PDB/Unipr... tree | commitdiff
2018-10-30 hansonrJAL-3026-JAL-3063 adds binary ext to J2S tree | commitdiff
2018-10-30 gmungocJAL-3144 spelling, Javadoc, abstract method for JalviewJS tree | commitdiff
2018-10-30 gmungocMerge branch 'Jalview-BH/JAL-3026' into feature/JAL... tree | commitdiff
2018-10-29 gmungocJAL-3144 SequenceFetcher without JDatabaseTree tree | commitdiff
2018-10-29 gmungocJAL-3038 add ActionListener and FocusListener to SwingJ... tree | commitdiff
2018-10-17 hansonrnonfunctional testing directory - just so I can see... tree | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... tree | commitdiff
2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB... tree | commitdiff
2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd tree | commitdiff
2018-09-24 gmungocJAL-3063 tidy commented out code tree | commitdiff
2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional... tree | commitdiff
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... tree | commitdiff
2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB tree | commitdiff
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB tree | commitdiff
2018-09-18 gmungocJAL-3063 top level element added to colours schema... tree | commitdiff
2018-09-18 gmungocJAL-3063 New View via JAXB tree | commitdiff
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje... tree | commitdiff
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to... tree | commitdiff
2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from... tree | commitdiff
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB tree | commitdiff
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... tree | commitdiff
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor tree | commitdiff
2018-09-11 gmungocJAL-3113 override minimum frame size in a way that... tree | commitdiff
2018-09-11 gmungocJAL-3048 recoded edit View Name dialog for JalviewJS tree | commitdiff
2018-09-11 gmungocJAL-3056 offer New / Expand / Gather View in JalviewJS tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-09-09 Jim ProcterJAL-3106 normalise extension before checking if it... tree | commitdiff
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows... tree | commitdiff
2018-09-07 Jim ProcterJAL-2988 if selected file is null (On Java 10/OSX ... tree | commitdiff
2018-09-07 Jim ProcterJAL-2988 workaround: overload getSelectedFile() because... tree | commitdiff
2018-09-07 Jim ProcterJAL-3106 use .jvp as default tree | commitdiff
2018-09-07 Jim ProcterJAL-3105 fix for focus transfer after window closed... tree | commitdiff
2018-09-06 Jim ProcterJAL-3091 code committed in error (failed patch for... tree | commitdiff
2018-09-06 Jim ProcterJAL-3091 release notes for JAL-3104 tree | commitdiff
2018-09-06 Jim ProcterJAL-3105 reallocate quality and consensus annotation... tree | commitdiff
2018-09-06 Jim ProcterJAL-2854 compute visible annotation panel height and... tree | commitdiff
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3076ensemblGeneId' into develop tree | commitdiff
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroov... tree | commitdiff
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings tree | commitdiff
2018-09-03 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988... tree | commitdiff
2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_... tree | commitdiff
2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of... tree | commitdiff
2018-09-03 gmungocJAL-3079 drop use of clip region while drawing wrapped... tree | commitdiff
2018-09-03 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception' into... tree | commitdiff
2018-09-03 Jim ProcterJAL-3076 clarify javadoc handling single sequence respo... bug/JAL-3076ensemblGeneId tree | commitdiff
2018-08-31 Jim ProcterJAL-3095 account for sequence start when highlighting... tree | commitdiff
2018-08-31 Jim ProcterMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno... tree | commitdiff
2018-08-31 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source... tree | commitdiff
2018-08-31 Jim Procterjava doc and fix for JAL-3095 - region of trimmed RNA... tree | commitdiff
2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup tree | commitdiff
2018-08-31 gmungocMerge branch 'bug/JAL-3003epsWithSelection' into trialMerge tree | commitdiff
2018-08-30 Jim ProcterJAL-3092 make sure base pair counter is always moved... tree | commitdiff
2018-08-30 gmungocMerge branch 'bug/JAL-247pngShowHiddenSeqMarks' into... tree | commitdiff
2018-08-30 gmungocJAL-3055 refinements to alternatives to deriveFont tree | commitdiff
2018-08-30 gmungocJAL-3079 don't create new Graphics to draw as it confus... tree | commitdiff
2018-08-28 gmungocJAL-3059 use correct border colour for groups tree | commitdiff
2018-08-28 gmungocJAL-3003 draw selection group outline on main graphics... tree | commitdiff
2018-08-28 gmungocJAL-3055 corrected logo drawing in JS tree | commitdiff
2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm tree | commitdiff
2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw... tree | commitdiff
2018-08-28 gmungocJAL-3087 include full alignment height in repeating... tree | commitdiff
2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code... tree | commitdiff
2018-08-28 gmungocJAL-3055 corrections to use of AffineTransform to scale... tree | commitdiff
2018-08-28 hansonrMerge branch 'Jalview-BH/JAL-3026' of https://source... tree | commitdiff
2018-08-27 hansonrJAL-3026 alignmentFrame.statusBar.setText -> .setStatus tree | commitdiff
2018-08-27 Ben SoaresJAL-3061 / JAL-3053 tree | commitdiff
2018-08-27 gmungocJAL-3055 restore original deriveFont code for Java... tree | commitdiff
2018-08-27 gmungocJAL-247 comment to clarify wrapped print algorithm bug/JAL-247pngShowHiddenSeqMarks tree | commitdiff
2018-08-27 hansonrJAL-3026 Jmol functioning; some issues tree | commitdiff
2018-08-24 gmungocJAL-247 print/export wrapped uses common code to draw... tree | commitdiff
2018-08-24 gmungocJAL-3087 include full alignment height in repeating... tree | commitdiff
2018-08-24 gmungocJAL-247 draw/print sequence ids now uses common code... tree | commitdiff
2018-08-24 hansonrJAL-3026 Java bug associated with File/String mods tree | commitdiff
2018-08-24 hansonrJAL-3026 GD#107,128,130,139 build-site.xml tree | commitdiff
2018-08-23 gmungocJAL-3059 use correct border colour for groups tree | commitdiff
2018-08-23 gmungocJAL-3003 draw selection group outline on main graphics... tree | commitdiff
2018-08-22 Jim ProcterJAL-2988 workaround for jalview save as dialogs - clear... tree | commitdiff
2018-08-22 gmungocJAL-3049 JAL-3032 tidy/i18n code, remove redundant... tree | commitdiff
2018-08-21 gmungocJAL-2717 corrected i18n of colour scheme names tree | commitdiff
2018-08-21 hansonrJAL-3026 fixes ?j2strace=xxx message, user.home, error... tree | commitdiff
2018-08-21 hansonrmc_view references were MCview tree | commitdiff
2018-08-21 hansonrJAL-3026 MCview -> mc_view tree | commitdiff
2018-08-20 gmungocJAL-3032 Feature Settings menu item always enabled... tree | commitdiff
2018-08-20 gmungocJAL-3032 variant of Sequence Details panel for JalviewJS tree | commitdiff
2018-08-20 gmungocJAL-3084 force EPS output to "Text" for JalviewJS tree | commitdiff
2018-08-20 gmungocJAL-3084 hide startup file, Chimera, HTML/SVG, Web... tree | commitdiff
2018-08-17 gmungocJAL-3048 remove obsolete way of handling dialogs in... tree | commitdiff
2018-08-17 gmungocJAL-3048 adapt 'input from URL' dialog for JalviewJS tree | commitdiff
2018-08-17 gmungocJAL-3038 unit test updates for JalviewJS workaround... tree | commitdiff
2018-08-16 gmungocJAL-3038 workaround to replace editable combobox with... tree | commitdiff
2018-08-16 gmungocMerge branch 'bug/JAL-3082selectRegex' into Jalview... tree | commitdiff
2018-08-16 gmungocJAL-3082 handle regex error, exclusive threshold, unit... tree | commitdiff
2018-08-15 gmungocJAL-3048 use JS-compatible JvOptionPane method tree | commitdiff
2018-08-15 gmungocMerge branch 'feature/JAL-3080clearTreeGroups' into... tree | commitdiff
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