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JAL-3874 attempt to add source jars to eclipse through buildship
[jalview.git] / src /
2021-09-16 gmungocJAL-3779 apply properties to all groups with given... tree | commitdiff
2021-09-16 Ben SoaresJAL-3774 combined changes from bug/JAL-3774_splitFrameF... tree | commitdiff
2021-09-16 Ben SoaresJAL-3739 (combined) commits from feature/JAL-3739_useFo... tree | commitdiff
2021-09-16 Jim ProcterJAL-3794 X and N are counted as DNA characters, but... tree | commitdiff
2021-09-16 gmungocJAL-3761 more consistent parameter naming tree | commitdiff
2021-09-16 gmungocJAL-3761 helper method reinstated to avoid code duplication tree | commitdiff
2021-09-16 gmungocJAL-3761 locateInFrom/To revised with tests; unused... tree | commitdiff
2021-09-16 gmungocJAL-3761 extra check that VCF feature is fully mappable... tree | commitdiff
2021-09-16 gmungocJAL-3761 debugged and working (but not tidied) locateIn... tree | commitdiff
2021-09-16 Ben SoaresJAL-3761 listToArray became rangeListToArray tree | commitdiff
2021-09-16 gmungocJAL-3761 locateInFrom2 work in progress commit tree | commitdiff
2021-09-15 gmungocJAL-3761 failing test, formatting, method renamed tree | commitdiff
2021-09-15 gmungocJAL-3751 only merge strictly contiguous ranges of mappings tree | commitdiff
2021-09-15 gmungocJAL-3788 synchronize concurrent findColour() and alignm... tree | commitdiff
2021-09-15 Ben SoaresJAL-3818 formatting tree | commitdiff
2021-09-15 gmungocJAL-3818 process Jmol callbacks in AWT thread tree | commitdiff
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 tree | commitdiff
2021-09-15 Jim ProcterMerge branch 'Jalview-JS/bug/JAL-3762_URLparamsOverride... tree | commitdiff
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 tree | commitdiff
2021-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2021-09-14 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba... tree | commitdiff
2021-09-14 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'... tree | commitdiff
2021-09-14 Jim ProcterJAL-3551 - doc tweak tree | commitdiff
2021-09-14 Jim ProcterJAL-3855 JAL-3829 better checks on PDB or mmCIF file... tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 JAL-3855 moved routing for retrieving structur... tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 JAL-3855 ignore case when detecting alphafold ID tree | commitdiff
2021-09-14 Jim ProcterJAL-3855 detect an alphafold model and import its tempe... tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 move mock query and responses to files tree | commitdiff
2021-09-14 Ben SoaresJAL-2422 Also look in ~/Applications for ChimeraX on... tree | commitdiff
2021-09-14 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 3d-beacons doesn’t work as a sequence source... tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 avoid sending rubbish to PDBe search api tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 some providers don’t provide model quality... tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 allow multiple URL mocks and include P01308... tree | commitdiff
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of... tree | commitdiff
2021-09-14 Ben SoaresJAL-2422 Fixed URL encoding of REST calls (broken paths... tree | commitdiff
2021-09-13 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2021-09-13 Ben SoaresJAL-2422 Fixed URL encoding of REST calls (broken paths... tree | commitdiff
2021-09-13 Ben SoaresMerge branch 'develop' into feature/JAL-2422ChimeraX tree | commitdiff
2021-09-13 Ben SoaresJAL-2422 Added linux rpm and deb install locations... tree | commitdiff
2021-09-13 Jim ProcterJAL-3829 select single best TDB structure and select... tree | commitdiff
2021-09-12 Jim ProcterJAL-3829 JalviewJS workarounds/patches tree | commitdiff
2021-09-11 Jim ProcterJAL-3829 ensure tests use mocked service - proper excep... tree | commitdiff
2021-09-11 Jim ProcterJAL-3829 patch failing tests and todo for future tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 provide both PDBe queries and 3D-Beacons queri... tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 insert title for structures from PDBe tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 update for v1.0 3d-beacons api spec tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 point at production 3d-beacons url tree | commitdiff
2021-09-08 Jim ProcterJAL-3829 refactor and JAL-3391 JAL-2935 first stab... tree | commitdiff
2021-09-08 Jim ProcterJAL-3829 allow client-side selection of structures... tree | commitdiff
2021-09-08 Jim ProcterJAL-3829 JAL-3868 TODO tree | commitdiff
2021-09-06 Jim ProcterJAL-3829 work in progress - look up additional metadata... tree | commitdiff
2021-09-06 Jim ProcterJAL-3829 look up column in FTS data tree | commitdiff
2021-09-06 Jim ProcterJAL-3829 mocking for PDBFTS for related query to Unipro... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 mocking for testing 3D-Beacons FTS endpoint tree | commitdiff
2021-09-03 Jim ProcterJAL-3863 promote non-canonical version of dbref to... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initial... tree | commitdiff
2021-09-03 Jim ProcterJAL-3865 isolate PDB and TDB clients and last query... tree | commitdiff
2021-09-03 Jim ProcterJAL-3863 passing test to verify a uniprot accession... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implement... tree | commitdiff
2021-09-03 Jim ProcterJAL-3855 don’t need to query Alphafold2 repository... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the Struct... tree | commitdiff
2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... tree | commitdiff
2021-09-02 gmungocJAL-1842 adjust code to match changed semantics of... tree | commitdiff
2021-09-02 gmungocJAL-3509 JAL-1842 minor tidying of code tree | commitdiff
2021-09-02 gmungocJAL-1842 remove redundant call to FeatureRenderer.featu... tree | commitdiff
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan... tree | commitdiff
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... tree | commitdiff
2021-08-30 Jim ProcterJAL-3863 add canonical DBRefEntry flag to Jalview project tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 generalised Alphafold retrieval mechanism... tree | commitdiff
2021-08-30 Jim ProcterJAL-3863 mark first accession retrieved from Uniprot... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 Structure chooser specific FTS interface and... tree | commitdiff
2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 proof in principle 3d-beacons sequence fetcher... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 3d-beacons has a custom alignment retrieval... tree | commitdiff
2021-08-30 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 fixed up the 3d-beacons data columns definitio... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 JAL-2176 - TODO re unused argument in FTSRestC... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 Javadoc for FTSColumnPreferences tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 pushed the PDBFTSClient specific code to new... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 removed unneeded attribute in FTS core tree | commitdiff
2021-08-30 arngucciJAL-3829_spike minor changes tree | commitdiff
2021-08-30 arngucciJAL-3832 Gui working, with 3DBeacons parameters tree | commitdiff
2021-08-30 arngucciMerge branch 'arnaud/develop' into arnaud/JAL-3929_spik... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 forgot to add in the dummy 3d-beacons db proxy tree | commitdiff
2021-07-27 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 suppress NPE when trying to retrieve SIFTS... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 ALPHAFOLD database source based on the PDB... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 check for existence of an alpha fold model... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 convenience method to check a URL will return... tree | commitdiff
2021-06-09 Jim ProcterJAL-3840 don’t update the modal residue count for gaps patch/JAL-3840_2_11_2 tree | commitdiff
2021-06-09 Jim Procterfixes JAL-3840 tree | commitdiff
2021-06-09 Jim ProcterJAL-3840 failing test - show that addGaps overflows tree | commitdiff
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more... tree | commitdiff
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor... tree | commitdiff
2021-04-06 Jim ProcterJAL-3832 dummy 3d-beacons database client and code... tree | commitdiff
2021-04-06 arngucciJAL-3829 more testing wit tdbeacons data columns and... arnaud/develop tree | commitdiff
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