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Merge branch 'develop' into features/JAL-1812_JAL-2083_groovyBinding
[jalview.git] / src /
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding tree | commitdiff
2016-06-20 gmungocJAL-2130 call viewer.dispose() on closing Jmol tree | commitdiff
2016-06-20 gmungocJAL-1667 updated PDB example query to a valid id (witho... tree | commitdiff
2016-06-17 tcofoegbuJAL-1823 Updated tooltip to reflect how a specific... tree | commitdiff
2016-06-17 tcofoegbuJAL-1976 clear message if export is cancelled at 'Rende... tree | commitdiff
2016-06-17 tcofoegbuJAL-1976 improved exception handler. tree | commitdiff
2016-06-17 tcofoegbuJAL-1976 added an intermediate message between a user... tree | commitdiff
2016-06-16 gmungocJAL-1993 close sequence fetcher when opening database... tree | commitdiff
2016-06-16 gmungocJAL-2112 optimisation of EMBL CDS parsing tree | commitdiff
2016-06-16 gmungocJAL-1993 hide sequence fetcher dialogue until database... tree | commitdiff
2016-06-15 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-15 tcofoegbuJAL-2002 disabled 'Best Uniport Coverage' filter. JAL... tree | commitdiff
2016-06-15 gmungocJAL-2025 unit tests added tree | commitdiff
2016-06-14 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-14 tcofoegbuJAL-2102 right justify 'Mass' in uniprot FTS, and ... tree | commitdiff
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures tree | commitdiff
2016-06-14 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-14 tcofoegbuJAL-2047 trapped block that could likely cause ClassCas... tree | commitdiff
2016-06-14 tcofoegbuJAL-2047 resolved structure chooser's displayed column... tree | commitdiff
2016-06-10 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-10 tcofoegbuJAL-1479 updated SIFTS FTP download URL, added improvem... tree | commitdiff
2016-06-10 Jim ProcterJAL-1941 added test URL and notes about PyRNA restclient tree | commitdiff
2016-06-09 gmungocJAL-2114 corrected Javadoc tree | commitdiff
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output... tree | commitdiff
2016-06-06 tcofoegbuJAL-1919, JAL-1960 fix to disable refetching dbrefs... tree | commitdiff
2016-06-06 tcofoegbuJAL-1944 bugfix for wrong alignment numbering when... tree | commitdiff
2016-06-02 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-02 tcofoegbuJAL-2020 fix for Jmol choking jalview while loading... tree | commitdiff
2016-06-02 gmungocJAL-1424 corrected typos in message text keys tree | commitdiff
2016-06-02 tcofoegbuJAL-1944 java doc update and minor house keeping tree | commitdiff
2016-06-01 Jim ProcterJAL-2038 ensure bare Strings are lowercased before... tree | commitdiff
2016-06-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation tree | commitdiff
2016-06-01 gmungocJAL-1424 utility to check resource bundle labels used... tree | commitdiff
2016-06-01 Jim Procterfix build tree | commitdiff
2016-05-31 Jim ProcterJAL-1551 JAL-2106 javadoc tree | commitdiff
2016-05-31 Jim ProcterJAL-2110 abstract methods should never reference their... tree | commitdiff
2016-05-31 tcofoegbumerge tree | commitdiff
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced... tree | commitdiff
2016-05-31 gmungocJAL-2023 adjustments to mappings added for split frame... tree | commitdiff
2016-05-31 gmungocJAL-2110 refactor + tests to allow a dbref version... tree | commitdiff
2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2 tree | commitdiff
2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop tree | commitdiff
2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections... tree | commitdiff
2016-05-31 gmungocJAL-2123 use "rlabel" command to highlight with label... tree | commitdiff
2016-05-30 tcofoegbuJAL-2038 fix to enable case-insensitive file name ... tree | commitdiff
2016-05-30 Jim ProcterJAL-553 JAL-1557 always send selections after triggerin... tree | commitdiff
2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to... tree | commitdiff
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD... tree | commitdiff
2016-05-30 Jim ProcterJAL-1551 formatting tree | commitdiff
2016-05-30 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-05-30 gmungocJAL-1989 equals method strengthened to fully match... tree | commitdiff
2016-05-30 Jim ProcterJAL-1552 fix JAL-2122 resolve File->string before addin... tree | commitdiff
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... tree | commitdiff
2016-05-27 gmungocJAL-1989 added hashCode and equals, renamed field to... tree | commitdiff
2016-05-27 gmungocJAL-1911 use existing object when setting 'Prompt each... tree | commitdiff
2016-05-27 tcofoegbumerge tree | commitdiff
2016-05-27 tcofoegbuJAL-1823 improvement to all chain code specification... tree | commitdiff
2016-05-27 tcofoegbuJAL-1911 further improvement to bugfix - do not save... tree | commitdiff
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed... tree | commitdiff
2016-05-27 gmungocJAL-1911 correct typo in field name tree | commitdiff
2016-05-26 tcofoegbumerge tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 improvement to bugfix - do not save i18n text... tree | commitdiff
2016-05-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-05-26 tcofoegbumerge tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-26 Jim ProcterJAL-2121 refactor todo tree | commitdiff
2016-05-26 gmungocJAL-391 add reverse / complement to command history... tree | commitdiff
2016-05-26 gmungocJAL-2035 relocated a comment tree | commitdiff
2016-05-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-05-26 Jim ProcterJAL-1551 formatting tree | commitdiff
2016-05-26 Jim ProcterJAL-1552 refactor shared dataflavor hander tree | commitdiff
2016-05-26 gmungocJAL-1993 open sequence fetcher tree on 'fetch sequences' tree | commitdiff
2016-05-26 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-05-26 Jim ProcterJAL-1552 extra debug logging for dataflavor if drop... tree | commitdiff
2016-05-26 tcofoegbumerge tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-26 gmungocJAL-1797 non-case-sensitive counting of residues /... tree | commitdiff
2016-05-26 gmungocJAL-2113 additions to embl_mapping.xml / data models... features/JAL-2113_emblXml1.2 tree | commitdiff
2016-05-25 Jim ProcterJAL-1522 patch - try to pick best text dataflavor tree | commitdiff
2016-05-23 gmungocJAL-2113 remove spaces in sequence from unmarshalling... tree | commitdiff
2016-05-23 gmungocJAL-2114 save 'raw' ENA location as a sequence feature... tree | commitdiff
2016-05-23 gmungocJAL-2113 tidy variable naming / javadoc tree | commitdiff
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove... tree | commitdiff
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL... tree | commitdiff
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format tree | commitdiff
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests tree | commitdiff
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors tree | commitdiff
2016-05-18 tcofoegbumerge tree | commitdiff
2016-05-18 tcofoegbuJAL-1563 smarter support for advanced querying of Unipr... tree | commitdiff
2016-05-18 gmungocJAL-2049 set sequence feature group to "Jalview" for... tree | commitdiff
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue tree | commitdiff
2016-05-17 tcofoegbuJAL-2106 JAL-1926 updated source doc for set/getSourceDBRef tree | commitdiff
2016-05-17 tcofoegbumerge tree | commitdiff
2016-05-17 tcofoegbuJAL-1270 Fixed anntatedPDBFileInputTest and updated... tree | commitdiff
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... tree | commitdiff
2016-05-12 gmungocJAL-2104 format tooltips to wrap correctly tree | commitdiff
2016-05-09 tcofoegbumerge tree | commitdiff
2016-05-09 tcofoegbuJAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin... tree | commitdiff
2016-05-09 tcofoegbuJAL-2102 implemented improvement to round FTS's numberi... tree | commitdiff
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