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Merge branch 'develop' into features/JAL-250_hideredundantseqs
[jalview.git] / src /
2017-08-27 Jim ProcterMerge branch 'develop' into features/JAL-250_hideredund... features/JAL-250_hideredundantseqs tree | commitdiff
2017-08-25 gmungocJAL-2480 suppress debug timing output that got left in tree | commitdiff
2017-08-23 gmungocJAL-2435 last lost commit e926a5d redone tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-08-14 Jim ProcterJAL-2335 choose appropriate alphabet for filtering... tree | commitdiff
2017-08-14 Jim ProcterJAL-2335 source formatting tree | commitdiff
2017-08-14 Jim ProcterJAL-2335 filterNonStandardResidues configurable for... tree | commitdiff
2017-08-14 Jim ProcterMerge branch 'patch/JAL-2663_filterAACons' into develop tree | commitdiff
2017-08-14 Jim ProcterJAL-2663 flag and filter to exclude non-standard amino... tree | commitdiff
2017-08-14 Jim ProcterJAL-2663 source formatting tree | commitdiff
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-10 gmungocJAL-2660 used saved value of ignoreGapsInConsensus... tree | commitdiff
2017-08-10 gmungocJAL-2505 apply changed description to new, not deleted... tree | commitdiff
2017-08-10 gmungocJAL-2658 ensure features dropdown entries are unique tree | commitdiff
2017-08-10 gmungocJAL-2593 don't filter out 'colour by label' features tree | commitdiff
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-09 Jim ProcterJAL-2426 Rfam download suffix tree | commitdiff
2017-08-09 Jim ProcterJAL-2426 JAL-1270 report Xfam download URL used if... tree | commitdiff
2017-08-09 Jim ProcterJAL-2425 raw stockholm download URLs tree | commitdiff
2017-08-09 Jim ProcterJAL-2425 remove overloaded getSequenceRecords method... tree | commitdiff
2017-08-09 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-09 gmungocJAL-2480 inline one method, improve comments tree | commitdiff
2017-08-09 Jim ProcterMerge branch 'bug/JAL-2634' into develop tree | commitdiff
2017-08-09 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... tree | commitdiff
2017-08-09 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-08 gmungocJAL-2560 alternative fix (reinstate lost line of code) tree | commitdiff
2017-08-08 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-08 gmungocJAL-2649 JAL-2650 wait for Conservation calc to complet... tree | commitdiff
2017-08-08 gmungocJAL-2650 configure new viewport settings before selecti... tree | commitdiff
2017-08-07 Jim ProcterMerge branch 'bug/JAL-2592userDefinedScheme' into develop tree | commitdiff
2017-08-03 gmungocJAL-2643 updated threshold on threshold value focus... tree | commitdiff
2017-08-03 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-03 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-03 gmungocJAL-2435 test for 'mirror font' option visible (not... tree | commitdiff
2017-08-02 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-01 Jim ProcterMerge branch 'bug/JAL-2632' into develop tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-01 gmungocJAL-2611 reinstate missed merge - again! tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-01 gmungocMerge branch 'feature/JAL-2611' into develop tree | commitdiff
2017-08-01 gmungocMerge branch 'bug/JAL-2630gradColourUpdateOverview... tree | commitdiff
2017-07-31 kiramtJAL-2634 Make overview box full height when alignment... bug/JAL-2634 tree | commitdiff
2017-07-31 gmungocJAL-2623 updated Overview/structure on input of thresho... bug/JAL-2630gradColourUpdateOverview tree | commitdiff
2017-07-31 kiramtJAL-2634 Added null test for graphics in AnnotationPane... tree | commitdiff
2017-07-31 gmungocJAL-2622 don't vertical scroll wrapped alignment id... tree | commitdiff
2017-07-31 gmungocJAL-2623 JAL-2015 set Below Threshold on FeatureColour... tree | commitdiff
2017-07-31 gmungocJAL-2630 applet update overview on release of threshold... tree | commitdiff
2017-07-28 kiramtJAL-2632 Added paintAlignment(true) to show cols code tree | commitdiff
2017-07-28 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-28 gmungocJAL-147 corrected status bar message for wrapped scroll... tree | commitdiff
2017-07-28 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-28 gmungocJAL-2622 no vertical scroll of wrapped alignment from... tree | commitdiff
2017-07-28 gmungocJAL-2006 squash rounding errors at min/max threshold... tree | commitdiff
2017-07-28 gmungocJAL-2630 update Overview/structure from graduated colou... tree | commitdiff
2017-07-24 gmungocJAL-2624 additional tests for FeatureColour.getColour(), tree | commitdiff
2017-07-23 gmungocJAL-2481 JAL-2624 test for render feature below score... tree | commitdiff
2017-07-23 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-22 gmungocJAL-2624 check feature colour threshold when colouring... tree | commitdiff
2017-07-22 gmungocJAL-2623 initialise colour threshold slider correctly tree | commitdiff
2017-07-22 kiramtMerge branch 'develop' into feature/JAL-2611 tree | commitdiff
2017-07-19 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-18 kiramtJAL-2611 Tidies, initial unit tests tree | commitdiff
2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView tree | commitdiff
2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll positi... tree | commitdiff
2017-07-18 gmungocJAL-147 draw up to last position of wrapped alignment! tree | commitdiff
2017-07-18 kiramtJAL-2611 Better tree | commitdiff
2017-07-17 kiramtJAL-2611 Still not happy with behaviour tree | commitdiff
2017-07-14 kiramtJAL-2611 First pass, not thrilled with hidden column... tree | commitdiff
2017-07-14 kiramtMerge branch 'feature/JAL-2613' into feature/JAL-2611 tree | commitdiff
2017-07-14 kiramtJAL-2611 Pre-merge checkin tree | commitdiff
2017-07-13 kiramtJAL-2611 Added overview dimensions test for position... tree | commitdiff
2017-07-13 kiramtJAL-2613 Unit tests and a fix. Phew. tree | commitdiff
2017-07-12 kiramtJAL-2613 Centre alignment at click point tree | commitdiff
2017-07-06 gmungocJAL-1858 fast paint wrapped highlights unless view... tree | commitdiff
2017-07-06 gmungocJAL-1858 scrollToWrappedVisible preserve any horizontal... tree | commitdiff
2017-07-06 gmungocJAL-147 prevent vertical Overview box movement in wrapp... tree | commitdiff
2017-07-06 gmungocJAL-147 unit test for hide/show sequences update Viewpo... tree | commitdiff
2017-07-06 gmungocJAL-2605 ensure correct scale width calculation tree | commitdiff
2017-07-05 gmungocJAL-1858 fastpaint highlights on wrapped alignment tree | commitdiff
2017-07-05 gmungocJAL-147 don't update overview for column selection... tree | commitdiff
2017-07-05 gmungocJAL-147 additions to unit test, check for negative... tree | commitdiff
2017-07-05 gmungocJAL-147 prevent overview box move up over hidden first... tree | commitdiff
2017-07-04 gmungocJAL-147 revised update of startSeq, endSeq on unhide... tree | commitdiff
2017-07-04 gmungocJAL-147 unit tests added, unused setEndRes removed tree | commitdiff
2017-07-04 gmungocJAL-147 corrected update of ViewportRanges for show... tree | commitdiff
2017-07-04 gmungocJAL-147 update ViewportRanges height after show/hide... tree | commitdiff
2017-07-04 gmungocJAL-147 remove redundant calls to update overview panel tree | commitdiff
2017-07-04 gmungocJAL-2608 tidy up OverviewPanel when closed tree | commitdiff
2017-07-04 gmungocJAL-147 call method that sets visible width when drawin... tree | commitdiff
2017-07-04 gmungocJAL-147 extract local variable for ease of debugging tree | commitdiff
2017-07-03 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView tree | commitdiff
2017-07-03 gmungocJAL-147 correct width out-by-one drawing ids tree | commitdiff
2017-07-03 gmungocJAL-147 don't scroll Overview box outside panel dimensions tree | commitdiff
2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scrol... tree | commitdiff
2017-07-03 gmungocJAL-147 don't draw ScalePanel when in wrapped mode tree | commitdiff
2017-07-03 gmungocJAL-2034 don't refresh Overview for selection in id... tree | commitdiff
2017-06-30 gmungocJAL-2505 correct handling of change of feature type tree | commitdiff
2017-06-30 gmungocJAL-2483 corrected finding feature groups tree | commitdiff
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