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JAL-1988 Make sensible choices if only the opening file has been opened, and alter...
[jalview.git] / src /
2023-01-30 Ben SoaresJAL-1988 Make sensible choices if only the opening... merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064 tree | commitdiff
2023-01-17 Ben SoaresJAL-3416 No longer needed tree | commitdiff
2023-01-17 Ben SoaresMerge branch 'develop' into merge/JAL-1988_JAL-3772... tree | commitdiff
2023-01-16 Ben SoaresJAL-3416 More tweaking of FlatLaf. Problem with macOS... tree | commitdiff
2023-01-11 Ben SoaresJAL-1988 JAL-3772 Mark the _default_ STARTUP_FILE as... tree | commitdiff
2023-01-06 Ben SoaresJAL-3416 More explicit setting of FlatLaf macOS theme tree | commitdiff
2023-01-06 Ben SoaresJAL-3416 Upgraded FlatLaf to 3.0 and added macOS theme... tree | commitdiff
2023-01-06 Ben SoaresJAL-3416 remove a missed panel titlebar icon in TreePanel tree | commitdiff
2022-11-29 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL tree | commitdiff
2022-11-16 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... tree | commitdiff
2022-11-16 Ben SoaresJAL-3416 make flatlaf default for linux improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf tree | commitdiff
2022-11-09 Ben SoaresJAL-3416 Add necessary logo to non-internal Frames tree | commitdiff
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... tree | commitdiff
2022-11-09 Ben SoaresJAL-3416 Add necessary logo to non-internal Frames tree | commitdiff
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... tree | commitdiff
2022-11-09 Ben SoaresJAL-3416 Remove all JFrame/JInternalFrame icons (set... tree | commitdiff
2022-11-09 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl... tree | commitdiff
2022-11-09 Ben SoaresJAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving... bug/JAL-1988_JAL-3772_improved_quit_handling tree | commitdiff
2022-11-08 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl... tree | commitdiff
2022-11-08 Ben SoaresJAL-1988 JAL-3776 Formatting JvOptionPane tree | commitdiff
2022-11-08 Ben SoaresJAL-1988 JAL-3772 Fixes highlighted by tests tree | commitdiff
2022-11-04 Ben SoaresJAL-3416 Added logoIcon to quit (and potentially other... tree | commitdiff
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 File Chooser iconified, JvOptionPanes iconifie... tree | commitdiff
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Allow other window closing dialogs... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 More JInternalFrame icons tree | commitdiff
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Tidying of unspecified Callable decla... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 Start to add JInternalFrame icons (to replace... tree | commitdiff
2022-11-02 Ben SoaresJAL-1988 JAL-3772 Moving packages to somewhere more... tree | commitdiff
2022-11-01 Ben SoaresJAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE tree | commitdiff
2022-11-01 Ben SoaresJAL-1988 JAL-3772 Change default alignmentviewport... tree | commitdiff
2022-10-29 Ben SoaresJAL-1988 JAL-3772 removed a debugging log line tree | commitdiff
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Removed 'Wait' button from waitDialog... tree | commitdiff
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Fixed wait between waitDialog appeara... tree | commitdiff
2022-10-27 Ben SoaresJAL-1988 Allow generic Container object in JvOptionPane... tree | commitdiff
2022-10-27 Ben SoaresMerge branch 'develop' into bug/JAL-1988_JAL-3772_impro... tree | commitdiff
2022-10-25 Ben SoaresJAL-3772 silly NPE error fixed tree | commitdiff
2022-10-25 Ben SoaresJAL-3416 Making FlatLaF default for macs due to a probl... tree | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 wait timer working first time but... tree | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave... tree | commitdiff
2022-10-11 Jim ProcterJAL-4073 fix PEBCAK failure tree | commitdiff
2022-10-06 Jim Procterstable url for PFAM retrieval via interpro api :) JAL... tree | commitdiff
2022-10-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2022-10-06 Jim ProcterJAL-4073 Pfam retrieval now works via a template includ... tree | commitdiff
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog... tree | commitdiff
2022-09-29 Ben SoaresMerge branch 'develop' into bug/JAL-1988_JAL-3772_impro... tree | commitdiff
2022-09-26 Ben SoaresJAL-1988 JAL-3772 linked undostack to saved changes... tree | commitdiff
2022-09-23 Ben SoaresJAL-1988 JAL-3772 Quit confirmation dialog boxes with... tree | commitdiff
2022-09-23 Ben SoaresJAL-3676 extra information about jalview_properties... tree | commitdiff
2022-09-23 Ben SoaresJAL-1988 property based fake delay whilst saving projec... tree | commitdiff
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering... tree | commitdiff
2022-09-02 Ben SoaresJAL-1988 Added a saves in progress check for quit tree | commitdiff
2022-08-31 Ben SoaresJAL-1988 added a saveInProgress stack to BackupFiles tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 imports reformatting tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 patch for 2.11.2.4 release tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'improvement/JAL-4014_gecos_colour_schemes... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... tree | commitdiff
2022-08-08 Jim ProcterJAL-4034 show the loading spinner when switching betwee... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'features/JAL-4034_improve_3dbeacons_butto... tree | commitdiff
2022-07-25 Ben SoaresJAL-4036 moved a comment block tree | commitdiff
2022-07-25 Ben SoaresJAL-4034 button looks better also on other OSes with... tree | commitdiff
2022-07-24 Ben SoaresJAL-4034 add round corners to 3DB confirmation button... tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 Changes made from code review CR-JAL-265 tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 Add getDbName to the GFTSPanelI and add an... tree | commitdiff
2022-07-22 Ben SoaresJAL-4036 removing the query field code from the dropdow... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 Don't autosearch changing index when autosearc... tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 add search fieldname to dropdown list tree | commitdiff
2022-07-21 Ben SoaresJAL-4036 New configuration, target and pagination proce... tree | commitdiff
2022-07-20 Jim ProcterJAL-4045 - don't apply distribution dependent scale... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Use the new non-modal JDialog for 3DBeacons... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Allow request for non-modal JDialog, which... tree | commitdiff
2022-07-12 Ben SoaresJAL-4034 change to jalview property name tree | commitdiff
2022-07-12 Ben SoaresJAL-4034 showConfirmDialog works for both desktop and... tree | commitdiff
2022-07-11 Ben SoaresJAL-4034 Non-blocking 3D Beacons query after warning... tree | commitdiff
2022-07-11 Ben SoaresJAL-4034 allow a jalview_property to set the threshold... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 fix #3 change uniprot ref fetch dialog to... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 Fix #2 show an icon and a button to press... tree | commitdiff
2022-06-30 Jim ProcterJAL-4036 use the legacy endpoint (and report the FTS... tree | commitdiff
2022-06-28 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-28 Ben SoaresJAL-1988 Don't put Quit in the File menu if there's... tree | commitdiff
2022-06-23 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-23 Ben SoaresJAL-1988 Check for setHandler capability to avoid About... tree | commitdiff
2022-06-17 Ben SoaresJAL-3027 Avoid FlatLAF Desktop class is JalviewJS tree | commitdiff
2022-06-15 Jim ProcterJAL-1988 JAL-3416 avoid unnecessary static flag tree | commitdiff
2022-06-15 Jim ProcterJAL-3418 JAL-1988 don’t need java version check anymore tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Hack to ensure Quit dialog box is moved to... tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called... tree | commitdiff
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-13 Ben SoaresJAL-3416 remove flat as default for linux tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe... tree | commitdiff
2022-06-13 Ben SoaresJAL-3416 Added some mac specific FlatLAF settings.... tree | commitdiff
2022-06-09 Jim ProcterMerge branch 'bug/JAL-4020_add_pymolwin_paths' into... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'patch/JAL-4024_jumpScrollHang' into develop tree | commitdiff
2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps... patch/JAL-4024_jumpScrollHang tree | commitdiff
2022-06-07 Ben SoaresJAL-4020 class formatting tree | commitdiff
2022-06-07 Ben SoaresJAL-4020 added the \Scripts\pymol.exe. to the pathList tree | commitdiff
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