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JAL-1764 add structure view type attribute to project schema
[jalview.git] / src /
2015-06-10 Jim ProcterJAL-1764 add structure view type attribute to project... schema/JAL-1764_structureViewAttribute tree | commitdiff
2015-06-08 gmungocJAl-1421 fix method reflection argument (properly this... tree | commitdiff
2015-06-08 gmungocJAL-1421 undid premature 'improvement' of method parame... tree | commitdiff
2015-06-05 tcofoegbuMerge branch 'bug/JAL-1760_restore-hidden-seqs' into... tree | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... tree | commitdiff
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped... tree | commitdiff
2015-06-05 gmungocJAL-1588 error dialog if Chimera project opened on... tree | commitdiff
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... tree | commitdiff
2015-06-05 gmungocJAL-1746 return empty string rather than null in getSta... tree | commitdiff
2015-06-05 gmungocJAL-1622 Chimera command timeout increased to 5 secs... tree | commitdiff
2015-06-05 gmungocJAL-1622 duplicate assignment removed (no functional... tree | commitdiff
2015-06-05 gmungocJAL-1753 JAL-1596 asynchronous command to Chimera ... tree | commitdiff
2015-06-05 gmungocJAL-1622 code tidy only, no functional change tree | commitdiff
2015-06-04 gmungocClear status bar message when initialisation complete tree | commitdiff
2015-06-04 gmungocJAL-1750 small tidy of AlignSeq.printMapping (+Junit) tree | commitdiff
2015-06-04 gmungocJAL-1544 spelling in javadoc only tree | commitdiff
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb() tree | commitdiff
2015-06-04 gmungocJAL-1747 close all windows on Quit (+small bug fix) tree | commitdiff
2015-06-04 gmungoctoString method added to aid viewing in the debugger tree | commitdiff
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... tree | commitdiff
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window' tree | commitdiff
2015-06-04 gmungocJAL-1743 View Chain sub-menu now being populated tree | commitdiff
2015-06-04 gmungocJAL-1753 statusPanel added (for ProgressBar); 'Fit... tree | commitdiff
2015-06-04 gmungocJAL-1753 ChimeraViewFrame hosts its own ProgressBar tree | commitdiff
2015-06-04 gmungocJAL-1742 don't offer to align another chain to the... tree | commitdiff
2015-06-04 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure... tree | commitdiff
2015-06-04 tcofoegbuclean up tree | commitdiff
2015-06-04 gmungocJAL-1421 generic collections in MCView package (+unit... tree | commitdiff
2015-06-04 tcofoegbuJAL-1756 bug-fix tree | commitdiff
2015-06-04 tcofoegbuJAL-1641 updated json schema to make it more generic... tree | commitdiff
2015-06-02 tcofoegbuJAL-1641 applet build fix tree | commitdiff
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package tree | commitdiff
2015-06-01 tcofoegbuJAL-1703 added tooltip hints to components of the Selec... tree | commitdiff
2015-06-01 tcofoegbuJAL-1734 updated progress bar messages tree | commitdiff
2015-05-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-29 tcofoegbuJAL-1748 house keeping tree | commitdiff
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-29 gmungocJAL-1753 declare field with interface type; check for... tree | commitdiff
2015-05-29 Jim ProcterMerge branch 'JAL-1755_npe_groupconsensus' into develop tree | commitdiff
2015-05-29 Jim ProcterJAL-1755 fix for NPE when setting up temporary variables tree | commitdiff
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-29 gmungocJAL-1753 duplicated code refactored to new class Progre... tree | commitdiff
2015-05-29 tcofoegbuJAL-1748 and employ preprocessing routine when return... tree | commitdiff
2015-05-29 tcofoegbuvalidate PDB selections on mouse release event tree | commitdiff
2015-05-28 tcofoegbuJAL-1700 made PDB service error mechanism more user... tree | commitdiff
2015-05-28 tcofoegbuJAL-1751 provided method to overide isCellEditable... tree | commitdiff
2015-05-28 tcofoegbuJAL-1749 reinstated the ability to view RNA structures tree | commitdiff
2015-05-28 tcofoegbuJAL-1740 minor house keeping tree | commitdiff
2015-05-27 tcofoegbuRemoved redundant classes and dependencies pulled in... tree | commitdiff
2015-05-27 tcofoegbuMerge branch 'features/JAL-1740_Decoup-BioJS' into... tree | commitdiff
2015-05-27 tcofoegbuJAL-1740 updated synch codes to use a git repo rather... features/JAL-1740_Decoup-BioJS tree | commitdiff
2015-05-26 tcofoegbuJAL-1627 bug fix to remove wierd space in Sequence... tree | commitdiff
2015-05-25 tcofoegbubuild fix tree | commitdiff
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into... tree | commitdiff
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB... tree | commitdiff
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into... tree | commitdiff
2015-05-22 tcofoegbuJAL-1745 improvement to retreive already downloaded... tree | commitdiff
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater tree | commitdiff
2015-05-20 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... tree | commitdiff
2015-05-20 tcofoegbuJAL-1739 added svid - serial version id to hold version... tree | commitdiff
2015-05-20 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-20 gmungocJAL-796 JAL-1652 better implementation (key binding... tree | commitdiff
2015-05-20 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop tree | commitdiff
2015-05-20 tcofoegbuJAL-1541 minor code clean up, and added test for BioJsH... tree | commitdiff
2015-05-19 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop tree | commitdiff
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... tree | commitdiff
2015-05-19 tcofoegbuJAL-1541 Modified BioJs exporter to take advantage... tree | commitdiff
2015-05-18 gmungocJAL-1663 detect tab out of RGB value; correct field... tree | commitdiff
2015-05-18 gmungocJAL-1663 apply new colour correctly; source formatting tree | commitdiff
2015-05-18 gmungocJAL-1652 Escape key now closes Find dialog tree | commitdiff
2015-05-15 gmungocJAL-1270 main method converted to JUnit test tree | commitdiff
2015-05-15 gmungocJAL-1270 main method converted to JUnit test 'as seen' tree | commitdiff
2015-05-15 gmungocJAL-1270 main method converted 'as seen' to JUnit tree | commitdiff
2015-05-15 gmungocJAL-1737 ignore non-positional annotations for display tree | commitdiff
2015-05-15 gmungocJAL-1270 added test for regex actually used; include... tree | commitdiff
2015-05-15 gmungocJAL-1270 main methods converted to JUnit tree | commitdiff
2015-05-13 gmungocJAL-1575 no-cache headers added to (empty) rest response tree | commitdiff
2015-05-13 gmungocJAL-1712 fixes/tests for Castor binding of EMBL XML... tree | commitdiff
2015-05-13 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-13 tcofoegbuFixed some broken tests tree | commitdiff
2015-05-13 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-12 tcofoegbuJAL_793 implemented embeding source data in exported... tree | commitdiff
2015-05-12 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-12 gmungocJAL-1712 fixes/tests for Castor binding and 'show flank... tree | commitdiff
2015-05-12 tcofoegbuMerge branch 'features/JAL-1641_JSON_' into develop tree | commitdiff
2015-05-12 tcofoegbuJAL_1641 added unit test and minor house keeping tree | commitdiff
2015-05-11 tcofoegbuMerge branch 'features/JAL-1641_JSON_' into develop tree | commitdiff
2015-05-11 tcofoegbuJAL-1641 cherry-picked changes into develop compatible... tree | commitdiff
2015-05-09 unknownJAL-1601 bugfix on previous commit tree | commitdiff
2015-05-09 unknownJAL-1601 patch burial display for prediction loaded... tree | commitdiff
2015-05-07 gmungocJAL-1575 bare bones RestHandler added tree | commitdiff
2015-05-07 Jim ProcterJAL-1731 fix JPred4 citation in legacy client code tree | commitdiff
2015-05-07 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-05-07 Jim ProcterJAL-1601 migrated the JABAWS 2.1 jpred burial represent... tree | commitdiff
2015-05-06 gmungocMerge branch 'Release_2_9_Branch' of https://source... tree | commitdiff
2015-05-06 gmungocJAL-1725 broadcast empty selection (to clear selection) features/JAL-1725chimeraListener tree | commitdiff
2015-05-06 gmungocJAL-1725 limit thread pool size; prefix /jalview to... tree | commitdiff
2015-05-06 gmungocJAL-1725 parse atomSpec with submodel; debug output... tree | commitdiff
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