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JAL-3588 Auto insert of Examples folder into DMG and an attempt to style both the...
[jalview.git] / src /
2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference tree | commitdiff
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers... tree | commitdiff
2020-04-06 gmungocJAL-3579 no Feature Editor if features not shown tree | commitdiff
2020-03-30 Jim ProcterJAL-3407 JAL-3130 back out java 9+ syntax that breaks... tree | commitdiff
2020-03-20 Jim ProcterJAL-3549 javadoc tree | commitdiff
2020-03-19 gmungocJAL-3305 don't propagate an empty SelectionGroup to... tree | commitdiff
2020-03-16 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2020-03-09 gmungocJAL-3528 unit tests added for failed lookup, Javadoc tree | commitdiff
2020-03-09 gmungocJAL-3549 JAL-3305 no Sort By Score / Density if no... tree | commitdiff
2020-03-09 gmungocJAL-3412 update layout whenever desired id width changes testbuild/JAL-3412_getIdWidth_test tree | commitdiff
2020-03-06 gmungocJAL-3187 unit test for findComplementFeaturesAtResidue tree | commitdiff
2020-03-06 gmungocMerge branch 'feature/JAL-3468featureDescriptionEllipsi... tree | commitdiff
2020-03-06 gmungocJAL-3468 i18n and additional unit tests feature/JAL-3468featureDescriptionEllipsis tree | commitdiff
2020-03-05 Jim ProcterMerge branch 'improvement/JAL-3543_dont_report_null_ver... tree | commitdiff
2020-03-04 Ben SoaresJAL-3468 small tidy tree | commitdiff
2020-03-04 Ben SoaresJAL-3468 improvement to feature description truncation... tree | commitdiff
2020-03-04 Ben SoaresJAL-3468 Obsessively fixed self-closing <br/> tags tree | commitdiff
2020-03-03 soaresJAL-3468 Adapted methods to report how many features... tree | commitdiff
2020-03-02 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous... tree | commitdiff
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console tree | commitdiff
2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_r... tree | commitdiff
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown... tree | commitdiff
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy tree | commitdiff
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3296changeStartInvalidateCursor... tree | commitdiff
2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into... tree | commitdiff
2020-02-26 Jim ProcterMerge branch 'improvement/JAL-3449_add_install4j_instal... tree | commitdiff
2020-02-21 Jim ProcterMerge branch 'bug/JAL-3536getCrossrefTwice' into develop tree | commitdiff
2020-02-21 Jim ProcterJAL-3186 ensure transparency slider position is updated... tree | commitdiff
2020-02-21 Jim ProcterJAL-3186 avoid repainting twice in splitframe tree | commitdiff
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks tree | commitdiff
2020-02-20 Jim ProcterJAL-3187 nice to have enabling/disabling of apply/cance... features/JAL-3187_uitweaks tree | commitdiff
2020-02-20 Jim ProcterJAL-3187 use the recommended way of catching tab select... tree | commitdiff
2020-02-20 gmungocJAL-3187 repaint complement after loading on features tree | commitdiff
2020-02-20 Jim ProcterJAL-3187 individual feature settings panel has revert... tree | commitdiff
2020-02-19 Jim ProcterJAL-3187 i18n for titles in windows/tabs tree | commitdiff
2020-02-19 Jim ProcterJAL-3535 todo re titles for CDS and Protein views in... tree | commitdiff
2020-02-19 Jim ProcterJAL-3187 - tabbed pane is nulled when feature settings... tree | commitdiff
2020-02-19 Ben SoaresMerge branch 'develop' into improvement/JAL-3449_add_in... improvement/JAL-3449_add_install4j_installer_getdown_versions_to_jalview_console.2 tree | commitdiff
2020-02-19 Jim ProcterJAL-3187 JAL-2764 close feature settings when parent... tree | commitdiff
2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default tree | commitdiff
2020-02-18 Ben SoaresJAL-3449 merge from develop tree | commitdiff
2020-02-18 Jim ProcterJAl-3187 JAL-3535 JAL-3534 update open feature settings... tree | commitdiff
2020-02-18 Mungo CarstairsJAL-3536 JAL-3187 don't create duplicate CDS-to-protein... bug/JAL-3536getCrossrefTwice tree | commitdiff
2020-02-17 Jim ProcterJAL-3534 patch for simple case (Protein or Nucleotide... tree | commitdiff
2020-02-17 Jim ProcterJAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature... tree | commitdiff
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog... tree | commitdiff
2020-02-17 Jim ProcterJAL-3187 better semantics for feature settings closed... tree | commitdiff
2020-02-14 Jim ProcterJAL-3187 alternative solution - gather feature settings... tree | commitdiff
2020-02-14 Jim ProcterJAL-1354 JAL-3528 fix bug from b594d516dac69eebcccdc743... tree | commitdiff
2020-02-12 Jim ProcterJAL-3187 applet alignFrame needs new api method tree | commitdiff
2020-02-12 Jim ProcterJAL-3187 first stab at ‘show CDS/Protein Settings’... tree | commitdiff
2020-02-12 Jim ProcterJAL-3187 view controller UI api method to show feature... tree | commitdiff
2020-02-12 Jim ProcterJAL-3187 convenience method on SplitContainerI to retri... tree | commitdiff
2020-02-12 Jim ProcterJAL-1354 JAL-3528 report missing keys for MessageManage... tree | commitdiff
2020-01-28 gmungocMerge branch 'feature/JAL-3121gffAttributeMap' into... tree | commitdiff
2020-01-28 gmungocJAL-3187 one more obsolete method removed tree | commitdiff
2020-01-24 gmungocJAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap tree | commitdiff
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ... tree | commitdiff
2020-01-16 Jim ProcterMerge branch 'improvement/JAL-3449_add_install4j_instal... tree | commitdiff
2020-01-16 Jim ProcterMerge branch 'improvement/JAL-3474_lots_of_.cvsignore_f... tree | commitdiff
2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax... tree | commitdiff
2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189 tree | commitdiff
2020-01-09 Ben SoaresJAL-3477 Javadoc, refactoring and slight changes to... tree | commitdiff
2019-12-20 Ben SoaresJAL-3473 Checked value of def and min. Set def to min... tree | commitdiff
2019-12-06 Ben SoaresJAL-3449 Added more versions to getdown splashscreen... tree | commitdiff
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version... tree | commitdiff
2019-11-20 Ben SoaresJAL-3477 A bit of refactoring for the better tree | commitdiff
2019-11-19 Ben SoaresJAL-3210 removing overly complicated logging. Settling... tree | commitdiff
2019-11-18 Ben SoaresJAL-3477 New jvmmemmax config option in getdown and... tree | commitdiff
2019-11-18 Ben SoaresJAL-3477 New sensible default decisions on memory,... tree | commitdiff
2019-11-01 Ben SoaresJAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files tree | commitdiff
2019-10-31 gmungocJAL-3468 truncate feature description to 40 chars in... tree | commitdiff
2019-09-26 gmungocJAL-2481 remove code duplication left by merge tree | commitdiff
2019-09-26 gmungocJAL-3441 action double-click in Feature Type column... tree | commitdiff
2019-08-23 gmungocJAL-3141 correct cast of spinner value tree | commitdiff
2019-08-22 gmungocJAL-3121 slightly cleaner parsing of, and unit test... tree | commitdiff
2019-08-22 gmungocMerge branch 'develop' into feature/JAL-3121gffAttributeMap tree | commitdiff
2019-08-22 gmungocJAL-3187 case-insensitive codon variant calculation tree | commitdiff
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... tree | commitdiff
2019-08-22 gmungocJAL-3187 one more obsolete method removed tree | commitdiff
2019-08-21 gmungocJAL-3187 minor code tidying, todo removal tree | commitdiff
2019-08-19 gmungocJAL-3412 calculateIdWidth - more consistency, constants... tree | commitdiff
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) trans... tree | commitdiff
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures tree | commitdiff
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures tree | commitdiff
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename... tree | commitdiff
2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'... tree | commitdiff
2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId() tree | commitdiff
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting tree | commitdiff
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless... tree | commitdiff
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry tree | commitdiff
2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to... tree | commitdiff
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight() tree | commitdiff
2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas tree | commitdiff
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe... tree | commitdiff
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into tree | commitdiff
2019-07-26 gmungocJAL-1793 only decode specific special characters in... tree | commitdiff
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation tree | commitdiff
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields tree | commitdiff
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data tree | commitdiff
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