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JAL-2574 renamed findFeatures as findOverlappingFeatures to minimise
[jalview.git] / test /
2017-06-30 gmungocJAL-2574 renamed findFeatures as findOverlappingFeature... bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release tree | commitdiff
2017-06-28 gmungocJAL-2541 clean unit test of cut/undo (ungapped sequence) tree | commitdiff
2017-06-27 gmungocJAL-2541 more useful assert message tree | commitdiff
2017-06-27 gmungocMerge branch 'features/JAL-2446NCList' into bug/JAL... tree | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-24 gmungocJAL-2589 unit test updated tree | commitdiff
2017-06-24 gmungocJAL-2547 fix case of gap followed by enclosing contact... tree | commitdiff
2017-06-22 gmungocJAL-2481 JAL-2593 JAL-2526 further optimisation of... tree | commitdiff
2017-06-22 gmungocJAL-2480 simpler and safer test to avoid adding duplicates tree | commitdiff
2017-06-21 gmungocJAL-2480 tidy generic initialisations, SequenceFeatures... tree | commitdiff
2017-06-21 gmungocJAL-2541 adjust end of contact feature spanning cut... tree | commitdiff
2017-06-21 gmungocJAL-2480 clarify that findOverlaps excludes spanning... tree | commitdiff
2017-06-20 gmungocJAL-2541 length check in deleteChars to avoid index... tree | commitdiff
2017-06-20 gmungocJAL-2541 working Cut/Undo with feature relocation tree | commitdiff
2017-06-15 gmungocJAL-2563 test updated for fix tree | commitdiff
2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring... tree | commitdiff
2017-06-15 gmungocJAL-2541 revised cut with features (work in progress) tree | commitdiff
2017-06-15 kiramtMerge remote-tracking branch 'origin/develop' into... bug/JAL-2591 tree | commitdiff
2017-06-15 gmungocMerge branch 'bug/JAL-2589gapColour' into develop tree | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... tree | commitdiff
2017-06-13 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-09 gmungocJAL-2589 render colour scheme gap colour in overview bug/JAL-2589gapColour tree | commitdiff
2017-06-09 gmungocJAL-2593 avoid redundant rendering of co-located features tree | commitdiff
2017-06-08 gmungocJAL-2526 correct boundary conditions for sequence left... tree | commitdiff
2017-06-08 gmungocJAL-2386 JAL-2570 use ResidueShader copy constructor... bug/JAL-2386groupConservationColouring tree | commitdiff
2017-06-08 kiramtJAL-2586 Clarification to URL link code bug/JAL-2586 tree | commitdiff
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... tree | commitdiff
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing. tree | commitdiff
2017-06-08 gmungocJAL-2526 cache first/last residue column positions... tree | commitdiff
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete) tree | commitdiff
2017-06-07 kiramtJAL-2591 More refactoring (incomplete) tree | commitdiff
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string... tree | commitdiff
2017-06-07 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-07 kiramtJAL-2591 updated HiddenColumns::findHiddenRegionPositio... tree | commitdiff
2017-06-07 gmungocJAL-2386 ensure group conservation shading is applied... tree | commitdiff
2017-06-06 gmungocJAL-2589 correct colour for Gap in Score and User Defin... tree | commitdiff
2017-06-05 kiramtJAL-2586 Checkstyle flagged fix of unintended fall... tree | commitdiff
2017-06-05 gmungocJAL-2480 remove redundant method, further test coverage tree | commitdiff
2017-06-05 gmungocMerge branch 'features/JAL-2526sequenceCursor' into tree | commitdiff
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into tree | commitdiff
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor tree | commitdiff
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-05 kiramtJAL-2571 Missed (alwaysRun=true) for @BeforeMethod tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 get bitset representing hidden columns tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 method taking a BitSet for hiding columns tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 fixed broken asserts for SequenceI.getInsertio... tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 SequenceI.getInsertionsAsBits for convenient... tree | commitdiff
2017-06-02 Jim ProcterMerge branch 'bug/JAL-2577' into develop tree | commitdiff
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-06-02 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-02 gmungocJAL-2526 additional tests for findPosition with/without... tree | commitdiff
2017-06-02 kiramtJAL-2577 Don't allow viewport ranges below 0. Unit... bug/JAL-2577 tree | commitdiff
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-06-01 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn tree | commitdiff
2017-06-01 Jim ProcterMerge branch 'features/JAL-1648_cache_user_inputs'... tree | commitdiff
2017-06-01 gmungocJAL-2563 JAL-2547 amended unit tests for amended setSta... tree | commitdiff
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop tree | commitdiff
2017-05-31 tcofoegbuJAL-2375 fix unit test to reflect improvement tree | commitdiff
2017-05-31 tcofoegbuFixed failing tests tree | commitdiff
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement tree | commitdiff
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571 tree | commitdiff
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to... tree | commitdiff
2017-05-30 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping... tree | commitdiff
2017-05-30 gmungocJAL-2526 first draft of findIndex/findPosition with... tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL... tree | commitdiff
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 gmungocJAL-2526 Sequence.findPositions to get residue position... tree | commitdiff
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop tree | commitdiff
2017-05-27 Jim ProcterJAL-2563 failing test to verify SetStatus returns posit... task/JAL-2562_SequenceI.findPosition tree | commitdiff
2017-05-27 Jim ProcterJAL-2563 test to verify SetStatus returns -1 so mouseOv... tree | commitdiff
2017-05-27 Jim ProcterJAL-2547 JAL-2562 rejig SetStatusMessage return value... tree | commitdiff
2017-05-27 Jim ProcterJAL-2526 test and documentation for SeqPanel.setStatus... tree | commitdiff
2017-05-26 gmungocJAL-2480 move ContiguousI and Range to jalview.datamodel tree | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures tree | commitdiff
2017-05-25 Jim ProcterMerge branch 'develop' into features/JAL-1648_cache_use... tree | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... tree | commitdiff
2017-05-25 gmungocJAL-2505 removed SequenceFeature constructor JAL-1641... tree | commitdiff
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group... tree | commitdiff
2017-05-24 gmungocJAL-2505 make SequenceFeature type, begin, end, feature... tree | commitdiff
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to... tree | commitdiff
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end... tree | commitdiff
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters tree | commitdiff
2017-05-24 gmungocMerge branch 'bug/JAL-2541cutWithFeatures' into feature... tree | commitdiff
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift... tree | commitdiff
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 RNAAliFold result to annotation file roundtrip... features/JAL-2549_updateJABAWSto220 tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 skip ‘Unrecognised Service’ which resolves... tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove... tree | commitdiff
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... tree | commitdiff
2017-05-23 gmungocJAL-2490 test coverage for printGffFormat before refact... tree | commitdiff
2017-05-23 gmungocJAL-2490 unit tests for getFeaturesForGroup tree | commitdiff
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... tree | commitdiff
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
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