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JAL-2087 workaround for IllegalStateException
[jalview.git] / test /
2017-11-28 gmungocJAL-2087 workaround for IllegalStateException feature/JAL-2087ensemblSpeciesAssist tree | commitdiff
2017-11-28 gmungocJAL-2087 /info/species client, alias cache, type-assist... tree | commitdiff
2017-11-28 gmungocJAL-2850 MapList.isToForwardStrand added tree | commitdiff
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher... tree | commitdiff
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with... tree | commitdiff
2017-11-23 gmungocJAL-2808 added conditions Present, NotPresent as options tree | commitdiff
2017-11-23 gmungocJAL-2808 pass FeatureSettings to controller as array... tree | commitdiff
2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character... tree | commitdiff
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2831' into develop tree | commitdiff
2017-11-16 Jim ProcterMerge branch 'bug/JAL-2829deleteCharsWithGaps' into... tree | commitdiff
2017-11-16 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-16 gmungocJAL-2816 JAL-2835 additional tests to include colour... tree | commitdiff
2017-11-16 gmungocJAL-2835 update test for array-valued attribute name tree | commitdiff
2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map tree | commitdiff
2017-11-16 gmungocJAL-2835 test updated for colour by 'nested attribute' tree | commitdiff
2017-11-16 gmungocJAL-2816 tests for findFeaturesAtColumn tree | commitdiff
2017-11-15 gmungocJAL-2816 exclude filtered / thresholded out features... tree | commitdiff
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute... tree | commitdiff
2017-11-15 gmungocJAL- 2835 support filter on nested attribute keys tree | commitdiff
2017-11-15 gmungocJAL-1270 add missing "Functional" to tests tree | commitdiff
2017-11-14 kiramtJAL-2831 tidies and tests tree | commitdiff
2017-11-14 Jim ProcterJAL-2758 update uniprot retrieval test tree | commitdiff
2017-11-14 kiramtMerge branch 'imp/JAL-2774' into bug/JAL-2831 tree | commitdiff
2017-11-13 Jim ProcterMerge branch 'features/JAL-2758_shorteruniprot' into... tree | commitdiff
2017-11-13 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-10 gmungocJAL-2829 fixes and unit tests bug/JAL-2829deleteCharsWithGaps tree | commitdiff
2017-11-10 gmungocJAL-2829 unit tests for failing cases tree | commitdiff
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains tree | commitdiff
2017-11-07 gmungocJAL-2069 corrected overloaded constructor behaviour tree | commitdiff
2017-11-07 gmungocJAL-2069 add attributeName and noValueColour to Feature... tree | commitdiff
2017-11-07 gmungocJAL-2816 tweaks to feature visibility checks tree | commitdiff
2017-11-07 gmungocJAL-2808 tweak to use Iterable for set of matchers tree | commitdiff
2017-11-06 gmungocJAL-2820 include attribute value used for feature colou... tree | commitdiff
2017-11-06 gmungocJAL-2808 small tweak to getString to quote the pattern... tree | commitdiff
2017-11-02 gmungocJAL-2808 toString modified, tests corrected tree | commitdiff
2017-10-31 gmungocMerge branch 'bug/JAL-2791selectVisibleFeatures' into tree | commitdiff
2017-10-31 gmungocJAL-2791 select columns by _visible_ features tree | commitdiff
2017-10-31 gmungocJAL-2808 revised util.matcher package, 2 filter conditi... tree | commitdiff
2017-10-31 gmungocJAL-2792 test updated for 3 column table tree | commitdiff
2017-10-31 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-10-30 gmungocJAL-2808 classes to support filtering by attribute... tree | commitdiff
2017-10-27 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-10-26 gmungocJAL-2792 html table for Feature Details report tree | commitdiff
2017-10-26 Jim ProcterMerge branch 'features/JAL-2685pairwiseSeqLimits' into... tree | commitdiff
2017-10-26 Jim ProcterJAL-2392 test asserts for progressbar creation on the... tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop tree | commitdiff
2017-10-25 Jim ProcterJAL-2727 add not to Test failed message recommending... tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into... tree | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... tree | commitdiff
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching... tree | commitdiff
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd... tree | commitdiff
2017-10-24 gmungocJAL-2787 set start/end seq explicitly for test tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop tree | commitdiff
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253 tree | commitdiff
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible tree | commitdiff
2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge tree | commitdiff
2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain tree | commitdiff
2017-10-17 Jim ProcterJAL-2481 test correct behaviour of findFeatureColour... tree | commitdiff
2017-10-13 kiramtJAL-2774 Created single event for update to both start... tree | commitdiff
2017-10-11 gmungocJAL-2609 tests updated for revised label width tree | commitdiff
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds tree | commitdiff
2017-10-11 gmungocJAL-2225 updates for review comments, Checkstyle tree | commitdiff
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop tree | commitdiff
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns... tree | commitdiff
2017-10-11 kiramtJAL-2742 test updates following review tree | commitdiff
2017-10-11 kiramtJAL-2742 minor test updates following review tree | commitdiff
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f... tree | commitdiff
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... tree | commitdiff
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries tree | commitdiff
2017-10-09 gmungocJAL-2523 convenience method to get model organisms tree | commitdiff
2017-10-09 gmungocJAL-2738 assertion for derived protein variant added tree | commitdiff
2017-10-09 gmungocJAL-2738 remove commented code, unit test coverage tree | commitdiff
2017-10-06 Jim ProcterJAL-2758 flag and tests for omitting uniprot accession... features/JAL-2758_shorteruniprot tree | commitdiff
2017-10-06 gmungocJAL-2738 unit test for mapping failure case tree | commitdiff
2017-10-05 gmungocJAL-2738 helper method for convolving mappings tree | commitdiff
2017-10-05 gmungocJAL-2755 transfer chromosomal reference from transcript... tree | commitdiff
2017-10-05 gmungocJAL-2738 method to compound / traverse / convolve two... tree | commitdiff
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader tree | commitdiff
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client... tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 patch tests for https tree | commitdiff
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client... tree | commitdiff
2017-09-29 Jim ProcterJAL-2745 patch tests for https tree | commitdiff
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry tree | commitdiff
2017-09-28 gmungocJAL-2744 refactor PopupMenu constructor to enable addin... tree | commitdiff
2017-09-26 kiramtJAL-2742 uncomment test tree | commitdiff
2017-09-26 kiramtJAL-2742 CigarArray constructor unit test tree | commitdiff
2017-09-26 gmungocJAL-2738 JAL-2154 add DBRef from transcript to synthesi... tree | commitdiff
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene tree | commitdiff
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever... tree | commitdiff
2017-09-25 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-09-25 gmungocJAL-2525 return no features if none matches ontology... tree | commitdiff
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader tree | commitdiff
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils tree | commitdiff
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