Merge branch 'features/JAL-2446NCList' into
[jalview.git] / test /
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-05 kiramtJAL-2571 Missed (alwaysRun=true) for @BeforeMethod
2017-06-04 Jim ProcterJAL-2291 get bitset representing hidden columns
2017-06-04 Jim ProcterJAL-2291 method taking a BitSet for hiding columns
2017-06-04 Jim ProcterJAL-2291 fixed broken asserts for SequenceI.getInsertio...
2017-06-04 Jim ProcterJAL-2291 SequenceI.getInsertionsAsBits for convenient...
2017-06-02 Jim ProcterMerge branch 'bug/JAL-2577' into develop
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features...
2017-06-02 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-02 gmungocJAL-2526 additional tests for findPosition with/without...
2017-06-02 kiramtJAL-2577 Don't allow viewport ranges below 0. Unit... bug/JAL-2577
2017-06-01 gmungocMerge branch 'features/JAL-2446NCList' into features...
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-01 Jim ProcterMerge branch 'features/JAL-1648_cache_user_inputs'...
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop
2017-05-31 tcofoegbuJAL-2375 fix unit test to reflect improvement
2017-05-31 tcofoegbuFixed failing tests
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to...
2017-05-30 gmungocMerge branch 'features/JAL-2446NCList' into features...
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping...
2017-05-30 gmungocJAL-2526 first draft of findIndex/findPosition with...
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL...
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-29 gmungocJAL-2526 Sequence.findPositions to get residue position...
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop
2017-05-27 Jim ProcterJAL-2563 failing test to verify SetStatus returns posit... task/JAL-2562_SequenceI.findPosition
2017-05-27 Jim ProcterJAL-2563 test to verify SetStatus returns -1 so mouseOv...
2017-05-27 Jim ProcterJAL-2547 JAL-2562 rejig SetStatusMessage return value...
2017-05-27 Jim ProcterJAL-2526 test and documentation for SeqPanel.setStatus...
2017-05-26 gmungocJAL-2480 move ContiguousI and Range to jalview.datamodel
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures
2017-05-25 Jim ProcterMerge branch 'develop' into features/JAL-1648_cache_use...
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const...
2017-05-25 gmungocJAL-2505 removed SequenceFeature constructor JAL-1641...
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group...
2017-05-24 gmungocJAL-2505 make SequenceFeature type, begin, end, feature...
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to...
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end...
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters
2017-05-24 gmungocMerge branch 'bug/JAL-2541cutWithFeatures' into feature...
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift...
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup
2017-05-23 Jim ProcterJAL-2549 RNAAliFold result to annotation file roundtrip... features/JAL-2549_updateJABAWSto220
2017-05-23 Jim ProcterJAL-2549 skip ‘Unrecognised Service’ which resolves...
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove...
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548...
2017-05-23 gmungocJAL-2490 test coverage for printGffFormat before refact...
2017-05-23 gmungocJAL-2490 unit tests for getFeaturesForGroup
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in...
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-22 gmungocJAL-2544 unit tests for sort by feature score
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct...
2017-05-22 gmungocJAL-2490 add non-positional feature case to test prior...
2017-05-22 gmungocJAL-2480 always include all non-positional features...
2017-05-19 gmungocJAL-2490 performant lookup of features for sorting
2017-05-19 gmungocJAL-2505 unit test for sort by feature density, Javadoc
2017-05-18 gmungocJAL-2541 initial unit tests for edit cut relocate features
2017-05-18 gmungocJAL-2541 fix to initSeqFrom (and minor code tidy);...
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256
2017-05-16 gmungocJAL-2505 set helix number as feature group in SequenceF...
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-16 gmungocJAL-2505 additional tests/asserts prior to refactoring
2017-05-16 kiramtMerge branch 'develop' into bug/JAL-2491
2017-05-16 kiramtJAL-2491 Better merge
2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
2017-05-15 Jim ProcterJAL-2311 disable and relocate Jared service tests to...
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore...
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-05-15 kiramtJAL-2491 Tests
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of...
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s...
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied...
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-05-12 kiramtJAL-2491 Unit test updates
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation...
2017-05-11 kiramtJAL-2491 Unit tests and updates
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS...
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is...
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of...
2017-05-09 tcofoegbuJAL-2520 unit test for improvement to download structur...
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm...
2017-05-09 gmungocJAL-2403 use preferred factory method to create score...
2017-05-09 gmungocJAL-2480 include sequenceFeatureStore in createDatasetS...
2017-05-09 gmungocJAL-2483 JAL-2481 fixed findAllFeatures to handle null...
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
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