kjvdheide [Mon, 13 Nov 2017 14:49:15 +0000 (14:49 +0000)]
JAL-1953 undid commenting out of message panels, should be more elegant
kjvdheide [Mon, 13 Nov 2017 14:47:57 +0000 (14:47 +0000)]
JAL-2796 first (ugly) start on changing Forester's MSA view to show seqs
kjvdheide [Mon, 13 Nov 2017 14:46:42 +0000 (14:46 +0000)]
JAL-2805 bunch of needed methods/constants made public
kjvdheide [Mon, 13 Nov 2017 14:43:59 +0000 (14:43 +0000)]
JAL-2805 Archaeopteryx main returns its created MainFrame instance
kjvdheide [Wed, 8 Nov 2017 17:48:49 +0000 (17:48 +0000)]
Made getters and setters for found nodes public (needed for Jalview)
kjvdheide [Mon, 30 Oct 2017 13:55:51 +0000 (13:55 +0000)]
removed unneeded import
kjvdheide [Sat, 28 Oct 2017 20:50:28 +0000 (21:50 +0100)]
Changed more concrete DistanceMatrix references to reference interface
kjvdheide [Sat, 28 Oct 2017 20:50:03 +0000 (21:50 +0100)]
Added getValues and write to DistanceMatrix interface for broader use
kjvdheide [Sat, 28 Oct 2017 20:26:02 +0000 (21:26 +0100)]
Redid changing concrete references to matrixes to interface references
kjvdheide [Fri, 27 Oct 2017 15:43:24 +0000 (16:43 +0100)]
Merge branch 'JalviewIntegration' of file:////Users/kjvanderheide/Documents/Archae/forester into JalviewIntegration
kjvdheide [Thu, 26 Oct 2017 09:21:17 +0000 (10:21 +0100)]
Merge branch 'master' of https://github.com/cmzmasek/forester.git into JalviewIntegration
kjvdheide [Thu, 26 Oct 2017 09:08:48 +0000 (10:08 +0100)]
capitalisation
cmzmasek [Wed, 25 Oct 2017 22:22:00 +0000 (15:22 -0700)]
removed diamond operator
kjvdheide [Thu, 12 Oct 2017 17:15:20 +0000 (18:15 +0100)]
Inference tab disabled and node frames now appear center of Aptx
kjvdheide [Thu, 12 Oct 2017 15:38:52 +0000 (16:38 +0100)]
disabled Archaeopteryx quit message
kjvdheide [Wed, 11 Oct 2017 20:12:19 +0000 (21:12 +0100)]
More generic uses of DistanceMatrix instead of concrete implementations
kjvdheide [Wed, 11 Oct 2017 20:03:44 +0000 (21:03 +0100)]
Use DistanceMatrix interface instead of the concrete implementation
kjvdheide [Wed, 11 Oct 2017 18:50:12 +0000 (19:50 +0100)]
made PhyloInferenceDialog constructor refer to null instead of mainframe
kjvdheide [Wed, 11 Oct 2017 14:48:56 +0000 (15:48 +0100)]
changed Mainframe from JFrame to JInternalFrame
cmzmasek [Wed, 20 Sep 2017 18:21:09 +0000 (11:21 -0700)]
in progress...
cmzmasek [Wed, 20 Sep 2017 18:20:34 +0000 (11:20 -0700)]
in progress...
cmzmasek [Tue, 19 Sep 2017 23:46:25 +0000 (16:46 -0700)]
in progress...
cmzmasek [Tue, 19 Sep 2017 17:34:51 +0000 (10:34 -0700)]
in progress...
cmzmasek [Fri, 15 Sep 2017 22:11:39 +0000 (15:11 -0700)]
cladinator v1.04
cmzmasek [Fri, 15 Sep 2017 22:10:52 +0000 (15:10 -0700)]
cladinator v1.04
cmzmasek [Fri, 15 Sep 2017 18:46:39 +0000 (11:46 -0700)]
in progress...
cmzmasek [Wed, 13 Sep 2017 19:08:38 +0000 (12:08 -0700)]
in progress...
cmzmasek [Wed, 13 Sep 2017 19:07:44 +0000 (12:07 -0700)]
in progress...
cmzmasek [Mon, 11 Sep 2017 23:03:21 +0000 (16:03 -0700)]
in progress
cmzmasek [Mon, 11 Sep 2017 23:02:28 +0000 (16:02 -0700)]
in progress...
cmzmasek [Wed, 6 Sep 2017 18:45:50 +0000 (11:45 -0700)]
added mapping
cmzmasek [Wed, 6 Sep 2017 18:45:15 +0000 (11:45 -0700)]
added mapping
cmzmasek [Wed, 6 Sep 2017 18:30:56 +0000 (11:30 -0700)]
in progress...
cmzmasek [Sun, 3 Sep 2017 02:17:46 +0000 (19:17 -0700)]
in progress...
cmzmasek [Sun, 3 Sep 2017 02:14:56 +0000 (19:14 -0700)]
old version...
cmzmasek [Sun, 3 Sep 2017 02:13:54 +0000 (19:13 -0700)]
in progress...
cmzmasek [Wed, 30 Aug 2017 23:39:29 +0000 (16:39 -0700)]
in progress...
cmzmasek [Wed, 30 Aug 2017 17:49:33 +0000 (10:49 -0700)]
in progress...
cmzmasek [Wed, 30 Aug 2017 17:48:53 +0000 (10:48 -0700)]
in progress...
cmzmasek [Wed, 23 Aug 2017 18:54:10 +0000 (11:54 -0700)]
in progress...
cmzmasek [Wed, 23 Aug 2017 18:52:34 +0000 (11:52 -0700)]
in progress...
cmzmasek [Wed, 23 Aug 2017 01:33:26 +0000 (18:33 -0700)]
in progress...
cmzmasek [Tue, 22 Aug 2017 19:08:12 +0000 (12:08 -0700)]
in progress....
cmzmasek [Mon, 21 Aug 2017 18:56:31 +0000 (11:56 -0700)]
in progress...
cmzmasek [Fri, 18 Aug 2017 21:49:00 +0000 (14:49 -0700)]
in progress...
cmzmasek [Thu, 17 Aug 2017 21:58:52 +0000 (14:58 -0700)]
in progress...
cmzmasek [Thu, 17 Aug 2017 16:41:48 +0000 (09:41 -0700)]
in progress...
cmzmasek [Thu, 17 Aug 2017 16:40:45 +0000 (09:40 -0700)]
in progress...
cmzmasek [Wed, 16 Aug 2017 19:22:09 +0000 (12:22 -0700)]
in progress...
cmzmasek [Tue, 15 Aug 2017 21:59:15 +0000 (14:59 -0700)]
in progress...
cmzmasek [Tue, 15 Aug 2017 21:58:11 +0000 (14:58 -0700)]
in progress...
cmzmasek [Fri, 11 Aug 2017 18:15:51 +0000 (11:15 -0700)]
confidence output added
cmzmasek [Fri, 11 Aug 2017 00:59:07 +0000 (17:59 -0700)]
tests...
cmzmasek [Fri, 11 Aug 2017 00:58:28 +0000 (17:58 -0700)]
tests...
cmzmasek [Fri, 11 Aug 2017 00:57:42 +0000 (17:57 -0700)]
in progress...
cmzmasek [Fri, 21 Jul 2017 22:54:29 +0000 (15:54 -0700)]
first prototype
cmzmasek [Fri, 21 Jul 2017 22:30:57 +0000 (15:30 -0700)]
first prototype
cmzmasek [Fri, 21 Jul 2017 19:54:34 +0000 (12:54 -0700)]
In progress...
cmzmasek [Tue, 18 Jul 2017 22:06:19 +0000 (15:06 -0700)]
updated
cmzmasek [Thu, 13 Jul 2017 20:21:30 +0000 (13:21 -0700)]
updated
cmzmasek [Wed, 12 Jul 2017 17:15:28 +0000 (10:15 -0700)]
in progress...
cmzmasek [Mon, 12 Jun 2017 22:45:38 +0000 (15:45 -0700)]
analyze pplacer output...
cmzmasek [Mon, 12 Jun 2017 22:44:50 +0000 (15:44 -0700)]
in progress..
cmzmasek [Fri, 9 Jun 2017 21:58:48 +0000 (14:58 -0700)]
pplacer
cmzmasek [Fri, 9 Jun 2017 20:39:20 +0000 (13:39 -0700)]
in progress...
cmzmasek [Fri, 9 Jun 2017 20:27:07 +0000 (13:27 -0700)]
in progress
cmzmasek [Fri, 9 Jun 2017 20:12:00 +0000 (13:12 -0700)]
in progress...
cmzmasek [Fri, 9 Jun 2017 20:11:15 +0000 (13:11 -0700)]
in progress...
cmzmasek [Thu, 18 May 2017 18:51:06 +0000 (11:51 -0700)]
in progress...
cmzmasek [Tue, 16 May 2017 23:34:06 +0000 (16:34 -0700)]
in progress...
cmzmasek [Thu, 11 May 2017 00:30:14 +0000 (17:30 -0700)]
in progress...
cmzmasek [Wed, 10 May 2017 23:57:31 +0000 (16:57 -0700)]
in progress...
cmzmasek [Wed, 10 May 2017 18:37:08 +0000 (11:37 -0700)]
in progress
cmzmasek [Fri, 28 Apr 2017 01:32:23 +0000 (18:32 -0700)]
in progress...
cmzmasek [Thu, 27 Apr 2017 19:06:13 +0000 (12:06 -0700)]
v 1.04
cmzmasek [Thu, 27 Apr 2017 19:04:45 +0000 (12:04 -0700)]
v 1.04
cmzmasek [Thu, 27 Apr 2017 18:39:02 +0000 (11:39 -0700)]
v1.03
cmzmasek [Thu, 27 Apr 2017 01:05:19 +0000 (18:05 -0700)]
in progress...
cmzmasek [Tue, 25 Apr 2017 20:38:07 +0000 (13:38 -0700)]
in progress...
cmzmasek [Tue, 25 Apr 2017 01:01:53 +0000 (18:01 -0700)]
in progress...
cmzmasek [Sat, 22 Apr 2017 01:19:32 +0000 (18:19 -0700)]
in pprogress...
cmzmasek [Thu, 20 Apr 2017 19:47:29 +0000 (12:47 -0700)]
in progress...
cmzmasek [Thu, 20 Apr 2017 01:58:19 +0000 (18:58 -0700)]
in progress....
cmzmasek [Mon, 17 Apr 2017 20:41:44 +0000 (13:41 -0700)]
in progress...
cmzmasek [Mon, 17 Apr 2017 15:53:55 +0000 (08:53 -0700)]
in progress...
cmzmasek [Tue, 11 Apr 2017 01:03:47 +0000 (18:03 -0700)]
in progress...
cmzmasek [Sat, 8 Apr 2017 00:47:00 +0000 (17:47 -0700)]
in progress...
cmzmasek [Thu, 6 Apr 2017 00:09:34 +0000 (17:09 -0700)]
in progress...
cmzmasek [Tue, 4 Apr 2017 00:48:47 +0000 (17:48 -0700)]
v 1.100
cmzmasek [Tue, 4 Apr 2017 00:41:57 +0000 (17:41 -0700)]
v 1.100
cmzmasek [Sat, 1 Apr 2017 01:08:27 +0000 (18:08 -0700)]
in progress...
cmzmasek [Thu, 30 Mar 2017 05:03:49 +0000 (22:03 -0700)]
in progress
cmzmasek [Thu, 30 Mar 2017 05:03:07 +0000 (22:03 -0700)]
in progress
cmzmasek [Wed, 29 Mar 2017 04:08:51 +0000 (21:08 -0700)]
in progress
cmzmasek [Wed, 29 Mar 2017 04:08:07 +0000 (21:08 -0700)]
in progress
cmzmasek [Tue, 28 Mar 2017 01:09:08 +0000 (18:09 -0700)]
couple of new shells
cmzmasek [Tue, 28 Mar 2017 01:08:24 +0000 (18:08 -0700)]
in progress...
cmzmasek [Tue, 28 Mar 2017 01:07:36 +0000 (18:07 -0700)]
in progress...
cmzmasek [Mon, 27 Mar 2017 22:11:58 +0000 (15:11 -0700)]
in progress...
cmzmasek [Mon, 27 Mar 2017 22:11:11 +0000 (15:11 -0700)]
in progress...
git://source.jalview.org / jalview.git / log