git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-2629 revert to showing Profile parameter even if only 1 choice
2018-05-10 gmungocJAL-2629 revert to showing Profile parameter even if...
commit | commitdiff | tree
2018-05-10 gmungocJAL-2629 default HMMBuild to alignment if not specified...
commit | commitdiff | tree
2018-05-10 gmungocJAL-591 reduced updating by checking/setting 'updating...
commit | commitdiff | tree
2018-05-10 gmungocJAL-2629 handle decline 'Add Database'
 commit | commitdiff | tree
2018-05-10 gmungocJAL-2629 adjust placement and optionality of arguments...
commit | commitdiff | tree
2018-05-10 gmungocJAL-591 show choice list with a single option
 commit | commitdiff | tree
2018-05-09 gmungocJAL-2714 HMMSearch cutoff by E-Value, Score or None
 commit | commitdiff | tree
2018-05-08 gmungocMerge branch 'develop' into features/mchmmer
 commit | commitdiff | tree
2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun
 commit | commitdiff | tree
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
commit | commitdiff | tree
2018-05-04 gmungocJAL-2906 small tweaks to release notes
 commit | commitdiff | tree
2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled
 commit | commitdiff | tree
2018-04-24 gmungocJAL-2939 exit calc thread if no HMM in alignment
 commit | commitdiff | tree
2018-04-24 gmungocJAL-591 use constant for Preferences key
 commit | commitdiff | tree
2018-04-24 gmungocJAL-2616 unused field removed
 commit | commitdiff | tree
2018-04-24 gmungocJAL-2956 unit test
 commit | commitdiff | tree
2018-04-23 gmungocJAL-2956 save/restore HMMER profile to/from Jalview...
commit | commitdiff | tree
2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns
 commit | commitdiff | tree
2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnnotati...
commit | commitdiff | tree
2018-04-23 gmungocJAL-2957 don't validate input on arrow keys
 commit | commitdiff | tree
2018-04-23 gmungocJAL-591 ensure slider hidden if text input field only
 commit | commitdiff | tree
2018-04-20 gmungocJAL-591 slider scale factor now derived from min-max...
commit | commitdiff | tree
2018-04-20 gmungocJAL-591 tidy and comment code
 commit | commitdiff | tree
2018-04-20 gmungocJAL-2629 tweaks to text
 commit | commitdiff | tree
2018-04-20 gmungocJAL-591 OptionBox FlowLayout, tweaks to wrapping of...
commit | commitdiff | tree
2018-04-19 gmungocJAL-591 utility method renamed and slightly generalised
 commit | commitdiff | tree
2018-04-18 gmungocMerge branch 'develop' into features/mchmmer
 commit | commitdiff | tree
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
commit | commitdiff | tree
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency...
commit | commitdiff | tree
2018-04-18 gmungocJAL-2629 corrected cutoff parameter passing to hmmsearch
 commit | commitdiff | tree
2018-04-17 gmungocMerge branch 'features/mchmmer' of https://source.jalview...
commit | commitdiff | tree
2018-04-17 gmungocJAL-2629 choice of hmm profile now a parameter not...
commit | commitdiff | tree
2018-04-17 Mungo CarstairsJAL-2937 working Cygwin bash execution of hmmbuild...
commit | commitdiff | tree
2018-04-16 gmungocJAL-2629 JAL-2937 remove redundant is/setHMMConsensusSequence
 commit | commitdiff | tree
2018-04-16 gmungocJAL-2937 use preferences for presets, simplify some...
commit | commitdiff | tree
2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelectedView...
commit | commitdiff | tree
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelectionM...
commit | commitdiff | tree
2018-04-12 gmungocJAL-1847 minor post-review updates
 commit | commitdiff | tree
2018-04-12 gmungocJAL-2944 tidies for review comments
 commit | commitdiff | tree
2018-04-09 Mungo CarstairsJAL-2937 Cygwin path preference, method refactoring
 commit | commitdiff | tree
2018-04-09 Mungo CarstairsJAL-2629 more error checking
 commit | commitdiff | tree
2018-04-09 Mungo CarstairsJAL-2937 extract reusable utility method
 commit | commitdiff | tree
2018-04-09 Mungo CarstairsJAL-2069 typo
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2599 MapList from HMM nodes to consensus dataset...
commit | commitdiff | tree
2018-03-30 gmungocJAL-2629 tidy code, factory methods for param sets
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2629 use correct gap character, revised deletion...
commit | commitdiff | tree
2018-03-30 gmungocJAL-2629 Javadoc updates
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2629 combine with/without defaults in one method...
commit | commitdiff | tree
2018-03-30 gmungocJAL-2939 field/method naming more consistent
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2629 ensure hmm consensus sequence set on alignment...
commit | commitdiff | tree
2018-03-30 gmungocJAL-2941 'map hmm to RF' removed pending clarifications
 commit | commitdiff | tree
2018-03-30 gmungocsmall tidy
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2938 revisions to implementation details
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2939 remove commented out code
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2599 move utility method to MappingUtils
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2939 simplified way of getting hmm consensus residue
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2629 add title to output alignment window
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2629 select HMM selects sequence under cursor
 commit | commitdiff | tree
2018-03-30 gmungocJAL-2599 corrected test file name in unit test
 commit | commitdiff | tree
2018-03-29 gmungocJAL-2907 test method renamed to match method name change
 commit | commitdiff | tree
2018-03-29 gmungocJAL-2907 bug fix redone on HMMER branch
 commit | commitdiff | tree
2018-03-28 gmungocJAL-1265 output all dbrefs in Stockholm (+tests) (...
commit | commitdiff | tree
2018-03-26 gmungocJAL-2939 pull up set/IsNormalise[HMM]SequenceLogo
 commit | commitdiff | tree
2018-03-26 gmungocJAL-2939 unused action handler methods removed
 commit | commitdiff | tree
2018-03-26 gmungocJAL-2939 no need to recalc HMM annotation for show...
commit | commitdiff | tree
2018-03-26 gmungocJAL-2939 always store Information profile
 commit | commitdiff | tree
2018-03-23 gmungocJAL-2629 pad gaps when exporting alignment as 'database...
commit | commitdiff | tree
2018-03-23 gmungocJAL-2937 unused field removed
 commit | commitdiff | tree
2018-03-23 gmungocJAL-2938 update colour schemes enum for class name...
commit | commitdiff | tree
2018-03-23 gmungocJAL-2938 extracted base class for Hmmer colour schems
 commit | commitdiff | tree
2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters
 commit | commitdiff | tree
2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead...
commit | commitdiff | tree
2018-03-21 gmungocJAL-2629 tweaks to Information annotation updating
 commit | commitdiff | tree
2018-03-20 gmungocJAL-2629 InformationThread.findOrCreateAnnotation and...
commit | commitdiff | tree
2018-03-20 gmungocMerge branch 'develop' into features/mchmmer
 commit | commitdiff | tree
2018-03-16 gmungocJAL-2679 getGeneId() now uses the same pattern as getGeneLoc...
commit | commitdiff | tree
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
commit | commitdiff | tree
2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature...
commit | commitdiff | tree
2018-03-16 gmungocMerge branch 'develop' into features/mchmmer
 commit | commitdiff | tree
2018-03-16 gmungocMerge branch 'bug/JAL-2865removeGC' into develop
 commit | commitdiff | tree
2018-03-16 gmungocMerge branch 'develop' into trialMerge
 commit | commitdiff | tree
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
 commit | commitdiff | tree
2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
commit | commitdiff | tree
2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
 commit | commitdiff | tree
2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
 commit | commitdiff | tree
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
 commit | commitdiff | tree
2018-03-08 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
commit | commitdiff | tree
2018-03-08 gmungocJAL-2885 tests updated for code changes
 commit | commitdiff | tree
2018-03-08 gmungocJAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
commit | commitdiff | tree
2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
 commit | commitdiff | tree
2018-03-07 gmungocJAL-2922 [2] not [1] for Boolean column of table
 commit | commitdiff | tree
2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
 commit | commitdiff | tree
2018-03-07 gmungocJAL-2922 i18n and bespoke handler for Invert Selection
 commit | commitdiff | tree
2018-03-07 gmungocMerge branch 'bug/JAL-2924nullTooltip' into releases...
commit | commitdiff | tree
2018-03-07 gmungocJAL-2926 fix copy group consensus (and paste sequence...
commit | commitdiff | tree
2018-03-07 gmungocJAL-2925 handle empty annotation when copying group...
commit | commitdiff | tree
2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
commit | commitdiff | tree
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM...
commit | commitdiff | tree
2018-03-02 gmungocJAL-2729 draft help pages for HMMER menu
 commit | commitdiff | tree
2018-03-01 gmungocJAL-2629 revising hmmer annotation updating (wip)
 commit | commitdiff | tree
next